scaffold688 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold688 |
142 |
224 |
+ |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold688 |
1366 |
1400 |
+ |
(T)n |
Simple_repeat |
| scaffold688 |
1458 |
1499 |
+ |
(T)n |
Simple_repeat |
| scaffold688 |
1858 |
1878 |
+ |
(T)n |
Simple_repeat |
| scaffold688 |
2258 |
2302 |
+ |
(TTGAT)n |
Simple_repeat |
| scaffold688 |
5042 |
5087 |
+ |
(TA)n |
Simple_repeat |
| scaffold688 |
7481 |
7555 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
7790 |
7979 |
- |
RS4 |
Unspecified |
| scaffold688 |
8308 |
8551 |
+ |
RS4 |
Unspecified |
| scaffold688 |
8884 |
8926 |
+ |
(TTCATT)n |
Simple_repeat |
| scaffold688 |
9342 |
9383 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
9761 |
9814 |
+ |
(CTCTT)n |
Simple_repeat |
| scaffold688 |
9956 |
9999 |
+ |
(TC)n |
Simple_repeat |
| scaffold688 |
10166 |
10198 |
+ |
(GTCAT)n |
Simple_repeat |
| scaffold688 |
11592 |
11631 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
13609 |
13789 |
+ |
RS18020 |
Unspecified |
| scaffold688 |
14386 |
14479 |
- |
RS16382 |
Unspecified |
| scaffold688 |
15495 |
15543 |
+ |
(ATTC)n |
Simple_repeat |
| scaffold688 |
20333 |
20362 |
+ |
(TAT)n |
Simple_repeat |
| scaffold688 |
20926 |
20957 |
+ |
(ATTTATA)n |
Simple_repeat |
| scaffold688 |
26304 |
26466 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold688 |
26985 |
27007 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
27240 |
27293 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
27466 |
27751 |
+ |
COP3_I_MT-int |
LTR/Copia |
| scaffold688 |
27846 |
28023 |
- |
RS17860 |
Unspecified |
| scaffold688 |
28259 |
28489 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold688 |
28771 |
28873 |
- |
RS711 |
Unspecified |
| scaffold688 |
28986 |
29110 |
+ |
RS3000 |
Unspecified |
| scaffold688 |
29009 |
29122 |
+ |
RS711 |
Unspecified |
| scaffold688 |
29165 |
29310 |
- |
RS894 |
Unspecified |
| scaffold688 |
30324 |
30506 |
+ |
RS1347 |
Unspecified |
| scaffold688 |
30664 |
30727 |
- |
ATRAN |
DNA? |
| scaffold688 |
31014 |
31165 |
+ |
RS453 |
Unspecified |
| scaffold688 |
31181 |
31286 |
+ |
RS17985 |
Unspecified |
| scaffold688 |
31749 |
31809 |
- |
PL481 |
Unspecified |
| scaffold688 |
31882 |
31891 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold688 |
31892 |
31936 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold688 |
32557 |
32583 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
32794 |
32815 |
+ |
(T)n |
Simple_repeat |
| scaffold688 |
33167 |
33205 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
33934 |
34044 |
+ |
RS5582 |
Unspecified |
| scaffold688 |
34344 |
34370 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
34442 |
34759 |
+ |
RS13109 |
Unspecified |
| scaffold688 |
34774 |
34801 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
34887 |
34997 |
+ |
RS5582 |
Unspecified |
| scaffold688 |
35304 |
35339 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
35411 |
35724 |
+ |
RS13109 |
Unspecified |
| scaffold688 |
36470 |
36573 |
+ |
RS12584 |
Unspecified |
| scaffold688 |
39378 |
39419 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold688 |
40483 |
40537 |
+ |
(TACTCATA)n |
Simple_repeat |
| scaffold688 |
41546 |
41600 |
+ |
(TACTCATA)n |
Simple_repeat |
| scaffold688 |
44287 |
44325 |
+ |
(TTGAGT)n |
Simple_repeat |
| scaffold688 |
44444 |
44508 |
+ |
RS14885 |
Unspecified |
| scaffold688 |
45420 |
45517 |
+ |
GA-rich |
Low_complexity |
| scaffold688 |
45722 |
45809 |
+ |
(TTTATG)n |
Simple_repeat |
| scaffold688 |
46458 |
46582 |
+ |
PL856 |
Unspecified |
| scaffold688 |
46458 |
46566 |
- |
PL402 |
Unspecified |
| scaffold688 |
50037 |
50053 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
50148 |
50185 |
+ |
(TTGCAT)n |
Simple_repeat |
| scaffold688 |
54425 |
54456 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
54762 |
54794 |
+ |
(TGA)n |
Simple_repeat |
| scaffold688 |
55536 |
55581 |
+ |
G-rich |
Low_complexity |
| scaffold688 |
56309 |
56357 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold688 |
56358 |
56376 |
+ |
(TT)n |
Simple_repeat |
| scaffold688 |
57551 |
57581 |
+ |
(TTTAC)n |
Simple_repeat |
| scaffold688 |
60777 |
60811 |
+ |
GA-rich |
Low_complexity |
| scaffold688 |
67513 |
67559 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
67928 |
67963 |
+ |
(T)n |
Simple_repeat |
| scaffold688 |
68795 |
68837 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
69025 |
69030 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold688 |
69031 |
69087 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold688 |
69909 |
69925 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
70496 |
70603 |
- |
PL214 |
Unspecified |
| scaffold688 |
70988 |
71020 |
+ |
G-rich |
Low_complexity |
| scaffold688 |
71409 |
71462 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
71634 |
71693 |
- |
RS13501 |
Unspecified |
| scaffold688 |
72346 |
72390 |
+ |
(ATGAGTT)n |
Simple_repeat |
| scaffold688 |
76096 |
76140 |
+ |
PL114 |
Unspecified |
| scaffold688 |
76145 |
76373 |
+ |
PL422 |
Unspecified |
| scaffold688 |
76174 |
76373 |
+ |
RS58 |
Unspecified |
| scaffold688 |
76569 |
76612 |
+ |
RS25 |
Unspecified |
| scaffold688 |
77442 |
77478 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
77463 |
77492 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
77752 |
77779 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
77841 |
78013 |
- |
RS4 |
Unspecified |
| scaffold688 |
83006 |
83021 |
+ |
Copia-10_SB-I |
LTR/Copia |
| scaffold688 |
83022 |
83058 |
+ |
(CAACAGCAA)n |
Simple_repeat |
| scaffold688 |
83059 |
83095 |
+ |
Copia-10_SB-I |
LTR/Copia |
| scaffold688 |
83284 |
83329 |
- |
Gypsy-23_ST-I |
LTR/Gypsy |
| scaffold688 |
85296 |
85814 |
+ |
RS17461 |
Unspecified |
| scaffold688 |
85895 |
86413 |
+ |
RS17461 |
Unspecified |
| scaffold688 |
86910 |
87080 |
+ |
RS3973 |
Unspecified |
| scaffold688 |
87706 |
87790 |
+ |
(AATG)n |
Simple_repeat |
| scaffold688 |
88449 |
88533 |
+ |
(AATG)n |
Simple_repeat |
| scaffold688 |
88667 |
88674 |
+ |
(AATA)n |
Simple_repeat |
| scaffold688 |
88675 |
88725 |
+ |
(AATGA)n |
Simple_repeat |
| scaffold688 |
88726 |
88793 |
+ |
(AATA)n |
Simple_repeat |
| scaffold688 |
88760 |
88812 |
+ |
GA-rich |
Low_complexity |
| scaffold688 |
88888 |
88927 |
+ |
(AATT)n |
Simple_repeat |
| scaffold688 |
88986 |
89021 |
+ |
(TTG)n |
Simple_repeat |
| scaffold688 |
89582 |
89634 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
90538 |
90591 |
+ |
(TCCGG)n |
Simple_repeat |
| scaffold688 |
90866 |
90918 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
91414 |
91685 |
- |
RS1 |
Unspecified |
| scaffold688 |
91641 |
91693 |
- |
RS17600 |
Unspecified |
| scaffold688 |
92551 |
92636 |
+ |
PL701 |
Unspecified |
| scaffold688 |
92691 |
92797 |
+ |
RTE-1B_Mad |
LINE/RTE-BovB |
| scaffold688 |
92711 |
92841 |
+ |
ATCopia34_LTR |
LTR/Copia |
| scaffold688 |
94320 |
94364 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
94624 |
94660 |
+ |
(TACAAT)n |
Simple_repeat |
| scaffold688 |
95827 |
96123 |
+ |
RS210 |
Unspecified |
| scaffold688 |
96603 |
96638 |
+ |
(AATTTATC)n |
Simple_repeat |
| scaffold688 |
96705 |
96787 |
+ |
(TACTAC)n |
Simple_repeat |
| scaffold688 |
98999 |
99047 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
100955 |
100986 |
+ |
(ACAAA)n |
Simple_repeat |
| scaffold688 |
102521 |
102579 |
+ |
(TTA)n |
Simple_repeat |
| scaffold688 |
103864 |
103911 |
+ |
(TTT)n |
Simple_repeat |
| scaffold688 |
103911 |
103952 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
104079 |
104098 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
104680 |
104839 |
- |
RS79 |
Unspecified |
| scaffold688 |
104854 |
105099 |
+ |
RS296 |
Unspecified |
| scaffold688 |
105386 |
105492 |
- |
RS750 |
Unspecified |
| scaffold688 |
105793 |
105854 |
+ |
LINE1-21_ZM |
LINE/L1 |
| scaffold688 |
106091 |
106970 |
+ |
SHALINE10_MT |
LINE/L1 |
| scaffold688 |
108922 |
108960 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
109208 |
109251 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
109599 |
109636 |
+ |
RS4 |
Unspecified |
| scaffold688 |
109636 |
109723 |
- |
RS18181 |
Unspecified |
| scaffold688 |
109753 |
109854 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold688 |
113817 |
113976 |
+ |
RS4 |
Unspecified |
| scaffold688 |
113857 |
114032 |
+ |
RS18371 |
Unspecified |
| scaffold688 |
114020 |
114228 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold688 |
114696 |
114938 |
- |
RS106 |
Unspecified |
| scaffold688 |
116308 |
116349 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
116806 |
116848 |
+ |
A-rich |
Low_complexity |
| scaffold688 |
117133 |
117987 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold688 |
118173 |
118309 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold688 |
118320 |
118353 |
+ |
(TATTAT)n |
Simple_repeat |
| scaffold688 |
118356 |
118384 |
+ |
(ATA)n |
Simple_repeat |
| scaffold688 |
120317 |
120338 |
+ |
(A)n |
Simple_repeat |
| scaffold688 |
120503 |
120599 |
+ |
RS22 |
Unspecified |
| scaffold688 |
120613 |
120785 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold688 |
120827 |
120935 |
- |
RS86 |
Unspecified |
| scaffold688 |
120840 |
121066 |
+ |
RS549 |
Unspecified |
| scaffold688 |
121376 |
121391 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold688 |
121392 |
121425 |
+ |
(T)n |
Simple_repeat |
| scaffold688 |
124571 |
124788 |
+ |
PL132 |
Unspecified |
| scaffold688 |
124786 |
125352 |
- |
PL469 |
Unspecified |
| scaffold688 |
125360 |
125430 |
+ |
(TT)n |
Simple_repeat |
| scaffold688 |
125661 |
125729 |
+ |
(TACATAT)n |
Simple_repeat |
| scaffold688 |
126286 |
126469 |
- |
PL340 |
Unspecified |