scaffold7398 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold7398 |
615 |
635 |
+ |
(TA)n |
Simple_repeat |
scaffold7398 |
693 |
951 |
+ |
RS1 |
Unspecified |
scaffold7398 |
1743 |
1800 |
+ |
(TTAAT)n |
Simple_repeat |
scaffold7398 |
2573 |
2603 |
+ |
(AGTT)n |
Simple_repeat |
scaffold7398 |
3018 |
3041 |
+ |
(AT)n |
Simple_repeat |
scaffold7398 |
3246 |
3335 |
+ |
LTR-7_Mad-LTR |
LTR |
scaffold7398 |
3295 |
3336 |
- |
ATRAN |
DNA? |
scaffold7398 |
4783 |
5523 |
- |
PL556 |
Unspecified |
scaffold7398 |
6012 |
6064 |
- |
RS5 |
Unspecified |
scaffold7398 |
6218 |
6304 |
- |
RS12449 |
Unspecified |
scaffold7398 |
10813 |
13945 |
- |
Copia-48_ZM-I |
LTR/Copia |
scaffold7398 |
16927 |
16957 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
17040 |
17110 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
22307 |
22671 |
- |
RS148 |
Unspecified |
scaffold7398 |
24984 |
25016 |
+ |
(TTA)n |
Simple_repeat |
scaffold7398 |
25093 |
25147 |
+ |
(TTATT)n |
Simple_repeat |
scaffold7398 |
25162 |
25199 |
+ |
(TCTTAA)n |
Simple_repeat |
scaffold7398 |
25265 |
25851 |
- |
ATCopia70_I-int |
LTR/Copia |
scaffold7398 |
26690 |
26967 |
- |
ENSPM-6_ZM |
DNA/CMC-EnSpm |
scaffold7398 |
27294 |
27320 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
27463 |
27516 |
+ |
(TAAC)n |
Simple_repeat |
scaffold7398 |
28090 |
28143 |
- |
Copia-31_GM-I |
LTR/Copia |
scaffold7398 |
28669 |
28697 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
31180 |
31262 |
+ |
LTR-7_Mad-LTR |
LTR |
scaffold7398 |
32638 |
32732 |
+ |
RS16382 |
Unspecified |
scaffold7398 |
32732 |
32883 |
- |
RS18071 |
Unspecified |
scaffold7398 |
33062 |
33093 |
+ |
(TTTA)n |
Simple_repeat |
scaffold7398 |
33821 |
33860 |
- |
RS12885 |
Unspecified |
scaffold7398 |
33976 |
34013 |
+ |
(TTTTTA)n |
Simple_repeat |
scaffold7398 |
34270 |
34299 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
34741 |
34767 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
35408 |
35435 |
+ |
(ATTGC)n |
Simple_repeat |
scaffold7398 |
35552 |
35579 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
36324 |
36354 |
+ |
(ATTTG)n |
Simple_repeat |
scaffold7398 |
36360 |
36414 |
+ |
GA-rich |
Low_complexity |
scaffold7398 |
36393 |
36416 |
+ |
(GAGG)n |
Simple_repeat |
scaffold7398 |
37575 |
37608 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
38275 |
38445 |
+ |
RS38 |
Unspecified |
scaffold7398 |
38507 |
38547 |
+ |
(TAGGC)n |
Simple_repeat |
scaffold7398 |
39125 |
39296 |
+ |
(CAGCT)n |
Simple_repeat |
scaffold7398 |
40071 |
40172 |
+ |
(CAGCT)n |
Simple_repeat |
scaffold7398 |
40589 |
40615 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
40683 |
40774 |
+ |
RS4475 |
Unspecified |
scaffold7398 |
40885 |
40914 |
+ |
(AAT)n |
Simple_repeat |
scaffold7398 |
40952 |
40968 |
+ |
(ATA)n |
Simple_repeat |
scaffold7398 |
41713 |
41749 |
+ |
(ATT)n |
Simple_repeat |
scaffold7398 |
41754 |
41776 |
+ |
(TATT)n |
Simple_repeat |
scaffold7398 |
42016 |
42132 |
- |
RS285 |
Unspecified |
scaffold7398 |
44192 |
44230 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
44450 |
44488 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
45433 |
45456 |
+ |
(AAAG)n |
Simple_repeat |
scaffold7398 |
50177 |
50215 |
+ |
(CA)n |
Simple_repeat |
scaffold7398 |
51925 |
51944 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
55204 |
55280 |
+ |
(TTATA)n |
Simple_repeat |
scaffold7398 |
57274 |
57293 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
58463 |
58500 |
+ |
(ATATACG)n |
Simple_repeat |
scaffold7398 |
60420 |
60456 |
+ |
(TATTTT)n |
Simple_repeat |
scaffold7398 |
61081 |
61216 |
- |
RS324 |
Unspecified |
scaffold7398 |
61749 |
61784 |
+ |
(TTTTAT)n |
Simple_repeat |
scaffold7398 |
65514 |
65535 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
67380 |
67408 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
67510 |
67527 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
67578 |
67752 |
- |
EnSpm-1_HV |
DNA/CMC-EnSpm |
scaffold7398 |
67782 |
67865 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
67935 |
67974 |
+ |
(TCT)n |
Simple_repeat |
scaffold7398 |
68008 |
68041 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
68046 |
68086 |
+ |
(TTGTT)n |
Simple_repeat |
scaffold7398 |
68328 |
68369 |
+ |
(TTTGA)n |
Simple_repeat |
scaffold7398 |
71890 |
72005 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
scaffold7398 |
72016 |
72062 |
+ |
(ATT)n |
Simple_repeat |
scaffold7398 |
72275 |
72301 |
+ |
(AAT)n |
Simple_repeat |
scaffold7398 |
72397 |
72528 |
+ |
(TTA)n |
Simple_repeat |
scaffold7398 |
72534 |
72643 |
+ |
(ATCTGAAGTT)n |
Simple_repeat |
scaffold7398 |
72854 |
72872 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
78694 |
78956 |
+ |
RS365 |
Unspecified |
scaffold7398 |
79032 |
79288 |
- |
RS106 |
Unspecified |
scaffold7398 |
81847 |
81891 |
+ |
(AGTTC)n |
Simple_repeat |
scaffold7398 |
82336 |
82378 |
+ |
(TAT)n |
Simple_repeat |
scaffold7398 |
82698 |
83544 |
- |
RS758 |
Unspecified |
scaffold7398 |
83523 |
83772 |
+ |
RS1121 |
Unspecified |
scaffold7398 |
84340 |
84376 |
+ |
(ATATTT)n |
Simple_repeat |
scaffold7398 |
84377 |
84389 |
+ |
(ATATT)n |
Simple_repeat |
scaffold7398 |
84695 |
84713 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
85665 |
85691 |
+ |
(ATA)n |
Simple_repeat |
scaffold7398 |
87496 |
87532 |
- |
RS16836 |
Unspecified |
scaffold7398 |
87567 |
87624 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
88428 |
88699 |
- |
RS1 |
Unspecified |
scaffold7398 |
88669 |
88705 |
+ |
RS1 |
Unspecified |
scaffold7398 |
89118 |
89542 |
- |
PL178 |
Unspecified |
scaffold7398 |
90236 |
90501 |
- |
RS106 |
Unspecified |
scaffold7398 |
90500 |
91424 |
+ |
PL771 |
Unspecified |
scaffold7398 |
91726 |
91770 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
91852 |
91891 |
+ |
(AATGTGA)n |
Simple_repeat |
scaffold7398 |
92347 |
92400 |
+ |
(AATCTTT)n |
Simple_repeat |
scaffold7398 |
92664 |
92991 |
+ |
RS148 |
Unspecified |
scaffold7398 |
93978 |
94020 |
+ |
(AAAT)n |
Simple_repeat |
scaffold7398 |
94245 |
94291 |
- |
RS14852 |
Unspecified |
scaffold7398 |
94256 |
94435 |
- |
RS38 |
Unspecified |
scaffold7398 |
95157 |
95250 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
95319 |
95432 |
+ |
PL754 |
Unspecified |
scaffold7398 |
95321 |
95418 |
+ |
RS16382 |
Unspecified |
scaffold7398 |
96404 |
96734 |
- |
PL171 |
Unspecified |
scaffold7398 |
96809 |
96881 |
+ |
(TAATT)n |
Simple_repeat |
scaffold7398 |
96953 |
97009 |
+ |
(TATTT)n |
Simple_repeat |
scaffold7398 |
97647 |
97701 |
+ |
(TTAGATA)n |
Simple_repeat |
scaffold7398 |
99830 |
100057 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold7398 |
101018 |
101176 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
101152 |
101176 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
101901 |
102110 |
+ |
RS7944 |
Unspecified |
scaffold7398 |
102425 |
102506 |
+ |
PL221 |
Unspecified |
scaffold7398 |
102428 |
102497 |
- |
RS4546 |
Unspecified |
scaffold7398 |
102529 |
102554 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
102784 |
102956 |
+ |
RS133 |
Unspecified |
scaffold7398 |
103512 |
103542 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
103733 |
103759 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
109400 |
109417 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
109473 |
109543 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
109890 |
109913 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
109920 |
109959 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
109964 |
109996 |
+ |
(TTTAA)n |
Simple_repeat |
scaffold7398 |
110036 |
110071 |
+ |
(TTAATAT)n |
Simple_repeat |
scaffold7398 |
110125 |
110172 |
+ |
(ATAATT)n |
Simple_repeat |
scaffold7398 |
110325 |
110471 |
+ |
RS54 |
Unspecified |
scaffold7398 |
112407 |
112425 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
114242 |
114299 |
+ |
(AATTT)n |
Simple_repeat |
scaffold7398 |
119573 |
119639 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
119939 |
120186 |
- |
RS1492 |
Unspecified |
scaffold7398 |
120389 |
120452 |
+ |
(ATT)n |
Simple_repeat |
scaffold7398 |
121635 |
121677 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
123833 |
123870 |
+ |
(CGACGT)n |
Simple_repeat |
scaffold7398 |
125123 |
125150 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
126878 |
126975 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold7398 |
128297 |
128323 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
128482 |
128619 |
- |
RS11535 |
Unspecified |
scaffold7398 |
128723 |
128848 |
- |
RS11192 |
Unspecified |
scaffold7398 |
130590 |
130617 |
+ |
(CGG)n |
Simple_repeat |
scaffold7398 |
130892 |
130927 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
134175 |
134248 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
136032 |
136085 |
+ |
(AAT)n |
Simple_repeat |
scaffold7398 |
136434 |
136485 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
137272 |
137353 |
+ |
RS10938 |
Unspecified |
scaffold7398 |
137495 |
137516 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
138056 |
138120 |
- |
PL476 |
Unspecified |
scaffold7398 |
138494 |
138536 |
+ |
(ATA)n |
Simple_repeat |
scaffold7398 |
138670 |
138780 |
- |
RS17262 |
Unspecified |
scaffold7398 |
138686 |
138793 |
+ |
RS13929 |
Unspecified |
scaffold7398 |
138812 |
138915 |
+ |
RS15175 |
Unspecified |
scaffold7398 |
139552 |
139568 |
+ |
(T)n |
Simple_repeat |
scaffold7398 |
141013 |
141062 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
141264 |
141290 |
+ |
(ATTA)n |
Simple_repeat |
scaffold7398 |
142249 |
142281 |
+ |
(ATTTA)n |
Simple_repeat |
scaffold7398 |
142298 |
142488 |
- |
RS12287 |
Unspecified |
scaffold7398 |
142570 |
142601 |
+ |
(TGTTT)n |
Simple_repeat |
scaffold7398 |
144114 |
144184 |
+ |
MuDR-22_VV |
DNA/MULE-MuDR |
scaffold7398 |
145243 |
145288 |
- |
RS11773 |
Unspecified |
scaffold7398 |
147046 |
147178 |
+ |
RS9819 |
Unspecified |
scaffold7398 |
147085 |
147263 |
+ |
RS10332 |
Unspecified |
scaffold7398 |
147257 |
147973 |
+ |
Copia-33_GM-I |
LTR |
scaffold7398 |
148094 |
148234 |
+ |
RS15002 |
Unspecified |
scaffold7398 |
149175 |
149203 |
+ |
(GTGTAAT)n |
Simple_repeat |
scaffold7398 |
150546 |
150568 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
150604 |
150666 |
- |
RS5561 |
Unspecified |
scaffold7398 |
150802 |
150908 |
- |
PL523 |
Unspecified |
scaffold7398 |
151037 |
151084 |
+ |
(TTTAA)n |
Simple_repeat |
scaffold7398 |
151726 |
152547 |
+ |
RS5002 |
Unspecified |
scaffold7398 |
152306 |
152608 |
+ |
RS6812 |
Unspecified |
scaffold7398 |
153234 |
153281 |
+ |
(TTTAA)n |
Simple_repeat |
scaffold7398 |
153923 |
154744 |
+ |
RS5002 |
Unspecified |
scaffold7398 |
154503 |
154805 |
+ |
RS6812 |
Unspecified |
scaffold7398 |
154670 |
155205 |
- |
RS2912 |
Unspecified |
scaffold7398 |
155167 |
155256 |
- |
RS3923 |
Unspecified |
scaffold7398 |
155432 |
155695 |
+ |
RS240 |
Unspecified |
scaffold7398 |
155831 |
155981 |
+ |
RS6609 |
Unspecified |
scaffold7398 |
156615 |
156741 |
+ |
RS9819 |
Unspecified |
scaffold7398 |
156755 |
156787 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
157170 |
157294 |
+ |
RS9819 |
Unspecified |
scaffold7398 |
157207 |
157379 |
+ |
RS10332 |
Unspecified |
scaffold7398 |
161091 |
161267 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
161198 |
161267 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
161418 |
161471 |
+ |
Copia-25_BRa-I |
LTR/Copia |
scaffold7398 |
161508 |
161532 |
+ |
(TCAA)n |
Simple_repeat |
scaffold7398 |
162407 |
162564 |
+ |
RS10332 |
Unspecified |
scaffold7398 |
162558 |
163272 |
+ |
Copia-33_GM-I |
LTR |
scaffold7398 |
164709 |
164757 |
+ |
(TTAGTT)n |
Simple_repeat |
scaffold7398 |
165142 |
165224 |
- |
RS3558 |
Unspecified |
scaffold7398 |
166218 |
166265 |
+ |
(TTTAA)n |
Simple_repeat |
scaffold7398 |
166684 |
167070 |
- |
PL438 |
Unspecified |
scaffold7398 |
167628 |
167752 |
+ |
RS9819 |
Unspecified |
scaffold7398 |
167665 |
167837 |
+ |
RS10332 |
Unspecified |
scaffold7398 |
167831 |
168547 |
+ |
Copia-33_GM-I |
LTR |
scaffold7398 |
168668 |
168808 |
+ |
RS15002 |
Unspecified |
scaffold7398 |
169644 |
169672 |
+ |
(GTGTAAT)n |
Simple_repeat |
scaffold7398 |
169990 |
170006 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
177244 |
177281 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
177316 |
177338 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
178242 |
178289 |
- |
STOWAWAY2_ZM |
DNA/TcMar-Stowaway |
scaffold7398 |
178847 |
178896 |
+ |
(GAGCT)n |
Simple_repeat |
scaffold7398 |
179942 |
180006 |
+ |
(TTG)n |
Simple_repeat |
scaffold7398 |
181763 |
181795 |
+ |
(TTGTCG)n |
Simple_repeat |
scaffold7398 |
184201 |
184259 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold7398 |
187604 |
187650 |
+ |
(ACA)n |
Simple_repeat |
scaffold7398 |
192666 |
192685 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
192713 |
192747 |
+ |
(ATGAATA)n |
Simple_repeat |
scaffold7398 |
193323 |
193781 |
- |
PL2 |
Unspecified |
scaffold7398 |
193795 |
194069 |
+ |
RS586 |
Unspecified |
scaffold7398 |
194307 |
194379 |
+ |
A-rich |
Low_complexity |
scaffold7398 |
194746 |
194785 |
+ |
(TTTAAT)n |
Simple_repeat |
scaffold7398 |
197931 |
197961 |
+ |
(ATA)n |
Simple_repeat |
scaffold7398 |
198743 |
198806 |
- |
Copia-35_GM-LTR |
LTR/Copia |
scaffold7398 |
198817 |
199400 |
+ |
RS303 |
Unspecified |
scaffold7398 |
200987 |
201003 |
+ |
(A)n |
Simple_repeat |
scaffold7398 |
201261 |
201389 |
- |
PL424 |
Unspecified |
scaffold7398 |
201295 |
201401 |
- |
RS172 |
Unspecified |
scaffold7398 |
201356 |
201424 |
+ |
RS172 |
Unspecified |
scaffold7398 |
203730 |
204351 |
- |
PL53 |
Unspecified |
scaffold7398 |
204532 |
204845 |
- |
RS1213 |
Unspecified |
scaffold7398 |
205043 |
205164 |
- |
RS1215 |
Unspecified |
scaffold7398 |
205166 |
205200 |
+ |
(ATCT)n |
Simple_repeat |
scaffold7398 |
205480 |
205585 |
- |
RS10221 |
Unspecified |
scaffold7398 |
205690 |
205726 |
+ |
(TGATA)n |
Simple_repeat |
scaffold7398 |
206075 |
206100 |
+ |
(AAT)n |
Simple_repeat |
scaffold7398 |
206531 |
206581 |
+ |
(TA)n |
Simple_repeat |
scaffold7398 |
207577 |
207630 |
+ |
(AAT)n |
Simple_repeat |
scaffold7398 |
207674 |
207764 |
+ |
LTR-7_Mad-LTR |
LTR |
scaffold7398 |
208091 |
208220 |
- |
RS16338 |
Unspecified |
scaffold7398 |
208252 |
208443 |
+ |
(TG)n |
Simple_repeat |
scaffold7398 |
208414 |
208443 |
+ |
(TG)n |
Simple_repeat |
scaffold7398 |
208595 |
209470 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold7398 |
208801 |
208965 |
+ |
Copia-24_ST-I |
LTR/Copia |
scaffold7398 |
209046 |
209174 |
+ |
Copia-24_ST-I |
LTR/Copia |
scaffold7398 |
209689 |
209731 |
+ |
Copia-24_ST-I |
LTR/Copia |