scaffold8342 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold8342 |
1 |
348 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold8342 |
980 |
1159 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold8342 |
1247 |
1832 |
+ |
RS1901 |
Unspecified |
| scaffold8342 |
2097 |
2133 |
+ |
(A)n |
Simple_repeat |
| scaffold8342 |
2372 |
2423 |
+ |
(GTATCG)n |
Simple_repeat |
| scaffold8342 |
2670 |
2718 |
+ |
(TAAAAAA)n |
Simple_repeat |
| scaffold8342 |
3007 |
3168 |
+ |
RS649 |
Unspecified |
| scaffold8342 |
3176 |
3680 |
+ |
PL639 |
Unspecified |
| scaffold8342 |
4234 |
4276 |
+ |
(A)n |
Simple_repeat |
| scaffold8342 |
4787 |
5154 |
- |
RS1255 |
Unspecified |
| scaffold8342 |
9063 |
9172 |
+ |
GA-rich |
Low_complexity |
| scaffold8342 |
10582 |
10610 |
+ |
(CAAAAC)n |
Simple_repeat |
| scaffold8342 |
11115 |
11175 |
+ |
(A)n |
Simple_repeat |
| scaffold8342 |
11296 |
11397 |
+ |
GA-rich |
Low_complexity |
| scaffold8342 |
11564 |
11649 |
+ |
(AATT)n |
Simple_repeat |
| scaffold8342 |
12027 |
12122 |
- |
RS16382 |
Unspecified |
| scaffold8342 |
12373 |
12409 |
+ |
(TCCACA)n |
Simple_repeat |
| scaffold8342 |
12576 |
12599 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold8342 |
12765 |
12811 |
+ |
G-rich |
Low_complexity |
| scaffold8342 |
13382 |
13403 |
+ |
(T)n |
Simple_repeat |
| scaffold8342 |
13607 |
13636 |
+ |
(ACCCGA)n |
Simple_repeat |
| scaffold8342 |
13783 |
13823 |
+ |
(A)n |
Simple_repeat |
| scaffold8342 |
14043 |
14322 |
- |
RS586 |
Unspecified |
| scaffold8342 |
15470 |
15496 |
+ |
(ATTGA)n |
Simple_repeat |
| scaffold8342 |
15700 |
15816 |
- |
Copia-85_BRa-I |
LTR/Copia |
| scaffold8342 |
15835 |
16105 |
+ |
PL563 |
Unspecified |
| scaffold8342 |
16200 |
16227 |
+ |
(A)n |
Simple_repeat |
| scaffold8342 |
16283 |
16289 |
+ |
(CTT)n |
Simple_repeat |
| scaffold8342 |
16290 |
16324 |
+ |
(CTCCT)n |
Simple_repeat |
| scaffold8342 |
17069 |
17085 |
+ |
(T)n |
Simple_repeat |
| scaffold8342 |
17089 |
17480 |
- |
RS7979 |
Unspecified |
| scaffold8342 |
17495 |
17621 |
- |
RS6692 |
Unspecified |
| scaffold8342 |
17678 |
17772 |
- |
RS8079 |
Unspecified |
| scaffold8342 |
17764 |
19313 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold8342 |
19620 |
20517 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold8342 |
20609 |
21076 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold8342 |
20619 |
20960 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold8342 |
21017 |
21808 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold8342 |
21326 |
21531 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold8342 |
21575 |
21772 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold8342 |
21927 |
21953 |
+ |
(ATTGA)n |
Simple_repeat |
| scaffold8342 |
22632 |
22802 |
- |
RS586 |
Unspecified |
| scaffold8342 |
22852 |
22894 |
+ |
(T)n |
Simple_repeat |
| scaffold8342 |
22903 |
23044 |
+ |
ATHILA-2_SBi-I |
LTR/Gypsy |
| scaffold8342 |
23257 |
23273 |
+ |
(A)n |
Simple_repeat |
| scaffold8342 |
24327 |
24368 |
+ |
A-rich |
Low_complexity |
| scaffold8342 |
25597 |
25640 |
+ |
(TATT)n |
Simple_repeat |
| scaffold8342 |
25639 |
25662 |
+ |
(TTG)n |
Simple_repeat |
| scaffold8342 |
25663 |
25707 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8342 |
25818 |
25857 |
+ |
GA-rich |
Low_complexity |
| scaffold8342 |
26148 |
26189 |
+ |
(TATAATT)n |
Simple_repeat |
| scaffold8342 |
27602 |
27799 |
- |
RS2499 |
Unspecified |
| scaffold8342 |
27881 |
27955 |
+ |
(TCACTC)n |
Simple_repeat |
| scaffold8342 |
27928 |
27957 |
+ |
(TCTCA)n |
Simple_repeat |
| scaffold8342 |
28488 |
28543 |
+ |
(ATATTAT)n |
Simple_repeat |
| scaffold8342 |
28695 |
28727 |
+ |
(T)n |
Simple_repeat |
| scaffold8342 |
28973 |
29084 |
- |
RS1625 |
Unspecified |
| scaffold8342 |
29494 |
29642 |
- |
RS3590 |
Unspecified |
| scaffold8342 |
29536 |
29914 |
+ |
RS160 |
Unspecified |
| scaffold8342 |
29928 |
30109 |
- |
RS3533 |
Unspecified |
| scaffold8342 |
30259 |
30299 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold8342 |
30634 |
30865 |
- |
RS1 |
Unspecified |
| scaffold8342 |
32247 |
32465 |
- |
PL232 |
Unspecified |
| scaffold8342 |
32776 |
32799 |
+ |
(T)n |
Simple_repeat |
| scaffold8342 |
32800 |
32833 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold8342 |
34096 |
34193 |
+ |
(TGGATA)n |
Simple_repeat |
| scaffold8342 |
34408 |
34513 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold8342 |
34529 |
34682 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold8342 |
35193 |
35405 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold8342 |
35626 |
35658 |
+ |
A-rich |
Low_complexity |
| scaffold8342 |
36370 |
36416 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold8342 |
37753 |
37790 |
+ |
A-rich |
Low_complexity |
| scaffold8342 |
37856 |
38119 |
- |
RS68 |
Unspecified |
| scaffold8342 |
38148 |
38317 |
- |
RS133 |
Unspecified |
| scaffold8342 |
38832 |
38872 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold8342 |
39511 |
41054 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold8342 |
41094 |
41165 |
- |
PL834 |
Unspecified |
| scaffold8342 |
43147 |
43974 |
- |
PL475 |
Unspecified |