scaffold899 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold899 |
1 |
227 |
+ |
PL554 |
Unspecified |
| scaffold899 |
227 |
898 |
+ |
RS3063 |
Unspecified |
| scaffold899 |
537 |
1745 |
+ |
PL495 |
Unspecified |
| scaffold899 |
2273 |
3584 |
- |
RS9 |
Unspecified |
| scaffold899 |
3938 |
3960 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold899 |
4067 |
4110 |
+ |
(TTTAC)n |
Simple_repeat |
| scaffold899 |
4852 |
5095 |
- |
RS9 |
Unspecified |
| scaffold899 |
6417 |
6471 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
6792 |
8034 |
+ |
RS387 |
Unspecified |
| scaffold899 |
8035 |
8167 |
- |
PL568 |
Unspecified |
| scaffold899 |
8157 |
9206 |
- |
PL568 |
Unspecified |
| scaffold899 |
9413 |
10161 |
- |
Copia-50_GM-I |
LTR/Copia |
| scaffold899 |
9585 |
10161 |
- |
Copia-50_GM-I |
LTR/Copia |
| scaffold899 |
10871 |
10954 |
+ |
HAT-N16_Mad |
DNA/hAT-Tip100 |
| scaffold899 |
10983 |
11030 |
- |
Copia10-VV_LTR |
LTR/Copia |
| scaffold899 |
11230 |
11361 |
+ |
RS284 |
Unspecified |
| scaffold899 |
11630 |
11733 |
+ |
LT1_EPa |
LTR? |
| scaffold899 |
11805 |
12134 |
- |
Copia-50_GM-I |
LTR/Copia |
| scaffold899 |
12254 |
12869 |
- |
Copia-50_GM-I |
LTR/Copia |
| scaffold899 |
13694 |
13744 |
+ |
(TTAGAA)n |
Simple_repeat |
| scaffold899 |
13756 |
13834 |
+ |
RS548 |
Unspecified |
| scaffold899 |
13788 |
14069 |
+ |
RS548 |
Unspecified |
| scaffold899 |
13970 |
14146 |
- |
RS7335 |
Unspecified |
| scaffold899 |
14543 |
14719 |
+ |
RS7335 |
Unspecified |
| scaffold899 |
14620 |
14901 |
- |
RS548 |
Unspecified |
| scaffold899 |
15819 |
16084 |
+ |
Copia-54_VV-I |
LTR/Copia |
| scaffold899 |
16189 |
16205 |
+ |
(A)n |
Simple_repeat |
| scaffold899 |
22104 |
22389 |
- |
PL9 |
Unspecified |
| scaffold899 |
22865 |
22906 |
+ |
A-rich |
Low_complexity |
| scaffold899 |
23409 |
23448 |
+ |
(GATTTT)n |
Simple_repeat |
| scaffold899 |
23686 |
23738 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold899 |
23763 |
23871 |
+ |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold899 |
24287 |
24685 |
- |
Harbinger-1_VV |
DNA/PIF-Harbinger |
| scaffold899 |
24580 |
24718 |
+ |
HARB-9_SBi |
DNA/PIF-Harbinger |
| scaffold899 |
25547 |
25571 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
25612 |
25741 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold899 |
25964 |
26237 |
+ |
RS11902 |
Unspecified |
| scaffold899 |
31689 |
31954 |
- |
RS106 |
Unspecified |
| scaffold899 |
32901 |
33304 |
+ |
PL580 |
Unspecified |
| scaffold899 |
33308 |
33332 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
34349 |
34387 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
35615 |
35652 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold899 |
36279 |
36302 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
36509 |
36826 |
+ |
RS14962 |
Unspecified |
| scaffold899 |
36667 |
37022 |
+ |
RS703 |
Unspecified |
| scaffold899 |
37409 |
37460 |
+ |
(CCA)n |
Simple_repeat |
| scaffold899 |
37693 |
37959 |
- |
PL699 |
Unspecified |
| scaffold899 |
38067 |
38095 |
+ |
(GGGGC)n |
Simple_repeat |
| scaffold899 |
40525 |
40551 |
+ |
(A)n |
Simple_repeat |
| scaffold899 |
40962 |
41027 |
- |
RS15891 |
Unspecified |
| scaffold899 |
41152 |
41180 |
+ |
(A)n |
Simple_repeat |
| scaffold899 |
41934 |
41964 |
+ |
(CACAGA)n |
Simple_repeat |
| scaffold899 |
46145 |
46215 |
+ |
(A)n |
Simple_repeat |
| scaffold899 |
49197 |
49257 |
+ |
(A)n |
Simple_repeat |
| scaffold899 |
49383 |
49446 |
+ |
(A)n |
Simple_repeat |
| scaffold899 |
50694 |
50809 |
- |
PL439 |
Unspecified |
| scaffold899 |
50807 |
50919 |
- |
RS26 |
Unspecified |
| scaffold899 |
50954 |
50991 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold899 |
51123 |
51271 |
- |
RS26 |
Unspecified |
| scaffold899 |
51478 |
51556 |
+ |
(TTC)n |
Simple_repeat |
| scaffold899 |
51591 |
51782 |
+ |
RS6383 |
Unspecified |
| scaffold899 |
51813 |
52302 |
- |
RS11244 |
Unspecified |
| scaffold899 |
52546 |
53238 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold899 |
52658 |
52913 |
+ |
Copia15-VV_I-int |
LTR/Copia |
| scaffold899 |
53272 |
54613 |
+ |
Copia-53_VV-I |
LTR/Copia |
| scaffold899 |
54803 |
56531 |
+ |
Copia-53_VV-I |
LTR/Copia |
| scaffold899 |
54803 |
56385 |
+ |
Copia-53_VV-I |
LTR/Copia |
| scaffold899 |
54803 |
57079 |
+ |
Copia-53_VV-I |
LTR/Copia |
| scaffold899 |
56272 |
56531 |
+ |
RS1288 |
Unspecified |
| scaffold899 |
56301 |
57079 |
+ |
RS2822 |
Unspecified |
| scaffold899 |
57071 |
57560 |
- |
RS11244 |
Unspecified |
| scaffold899 |
57570 |
58204 |
+ |
PL439 |
Unspecified |
| scaffold899 |
58329 |
58347 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
58397 |
58434 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
58917 |
58945 |
+ |
A-rich |
Low_complexity |
| scaffold899 |
59037 |
59251 |
- |
RS1079 |
Unspecified |
| scaffold899 |
59194 |
59807 |
- |
RS1761 |
Unspecified |
| scaffold899 |
59365 |
59906 |
+ |
RS6893 |
Unspecified |
| scaffold899 |
60044 |
60383 |
- |
META1_I-int |
LTR/Copia |
| scaffold899 |
60885 |
62921 |
+ |
RS649 |
Unspecified |
| scaffold899 |
61961 |
63301 |
- |
RS215 |
Unspecified |
| scaffold899 |
63449 |
63477 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold899 |
63725 |
63759 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold899 |
63762 |
63790 |
+ |
A-rich |
Low_complexity |
| scaffold899 |
64202 |
64252 |
+ |
(CCA)n |
Simple_repeat |
| scaffold899 |
64359 |
64452 |
+ |
RS649 |
Unspecified |
| scaffold899 |
64449 |
64612 |
+ |
RS559 |
Unspecified |
| scaffold899 |
64615 |
65295 |
- |
RS215 |
Unspecified |
| scaffold899 |
65265 |
65776 |
- |
RS215 |
Unspecified |
| scaffold899 |
65781 |
66023 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold899 |
66652 |
66806 |
+ |
RS2133 |
Unspecified |
| scaffold899 |
66669 |
66806 |
- |
RS443 |
Unspecified |
| scaffold899 |
66816 |
67183 |
+ |
RS311 |
Unspecified |
| scaffold899 |
67514 |
67547 |
+ |
A-rich |
Low_complexity |
| scaffold899 |
67873 |
67916 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold899 |
68954 |
69197 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold899 |
68954 |
68992 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold899 |
68983 |
69197 |
+ |
PL63 |
Unspecified |
| scaffold899 |
69773 |
70305 |
+ |
RS192 |
Unspecified |
| scaffold899 |
70284 |
70367 |
+ |
RS1415 |
Unspecified |
| scaffold899 |
71793 |
72167 |
- |
RS8 |
Unspecified |
| scaffold899 |
72813 |
72836 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
73884 |
73914 |
+ |
(AT)n |
Simple_repeat |
| scaffold899 |
74582 |
74634 |
+ |
(TTTGCT)n |
Simple_repeat |
| scaffold899 |
74639 |
74680 |
+ |
(TTCTAT)n |
Simple_repeat |
| scaffold899 |
76717 |
76768 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold899 |
76910 |
76941 |
+ |
(GGTTG)n |
Simple_repeat |
| scaffold899 |
77051 |
77138 |
+ |
(AAT)n |
Simple_repeat |
| scaffold899 |
77112 |
77148 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold899 |
77591 |
77648 |
+ |
GA-rich |
Low_complexity |
| scaffold899 |
77856 |
77891 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
77892 |
77923 |
+ |
(TTGATT)n |
Simple_repeat |
| scaffold899 |
78011 |
78037 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold899 |
81659 |
81693 |
+ |
(T)n |
Simple_repeat |
| scaffold899 |
83305 |
84042 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold899 |
85146 |
85179 |
+ |
(TGGCT)n |
Simple_repeat |
| scaffold899 |
86603 |
86628 |
+ |
(CTTCG)n |
Simple_repeat |
| scaffold899 |
105835 |
105888 |
+ |
(ATTAGAA)n |
Simple_repeat |