scaffold9096 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold9096 |
1803 |
2465 |
- |
LINE |
LINE(TransposonPSI) |
scaffold9096 |
1819 |
1886 |
- |
LINE1-40_SBi |
LINE/L1 |
scaffold9096 |
1944 |
2011 |
- |
LINE1-40_SBi |
LINE/L1 |
scaffold9096 |
2268 |
2378 |
- |
SHALINE16_MT |
LINE/L1 |
scaffold9096 |
2548 |
2838 |
- |
LTR-1_SBi-LTR |
LTR |
scaffold9096 |
3037 |
3327 |
- |
LTR-1_SBi-LTR |
LTR |
scaffold9096 |
5214 |
5264 |
+ |
(GT)n |
Simple_repeat |
scaffold9096 |
6105 |
6298 |
+ |
Gypsy1-PTR_I-int |
LTR/Gypsy |
scaffold9096 |
6162 |
6315 |
+ |
Copia-10_TC-I |
LTR/Copia |
scaffold9096 |
6874 |
6909 |
+ |
(TTTTCT)n |
Simple_repeat |
scaffold9096 |
7605 |
7841 |
+ |
A-rich |
Low_complexity |
scaffold9096 |
7857 |
7923 |
+ |
(GTT)n |
Simple_repeat |
scaffold9096 |
10050 |
10073 |
+ |
(CTT)n |
Simple_repeat |
scaffold9096 |
12671 |
12693 |
+ |
(ATT)n |
Simple_repeat |
scaffold9096 |
13011 |
13093 |
+ |
A-rich |
Low_complexity |
scaffold9096 |
13578 |
13621 |
+ |
(TAC)n |
Simple_repeat |
scaffold9096 |
15454 |
16086 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
scaffold9096 |
17134 |
17182 |
+ |
(CAATAA)n |
Simple_repeat |
scaffold9096 |
17401 |
17452 |
+ |
(GCCG)n |
Simple_repeat |
scaffold9096 |
17453 |
17459 |
+ |
(GCTG)n |
Simple_repeat |
scaffold9096 |
18265 |
18306 |
+ |
(CCAACAAA)n |
Simple_repeat |
scaffold9096 |
18332 |
18368 |
+ |
A-rich |
Low_complexity |
scaffold9096 |
18905 |
18941 |
+ |
(CCGG)n |
Simple_repeat |
scaffold9096 |
19156 |
19238 |
- |
GYPSHAN_I_MT-int |
LTR/Gypsy |
scaffold9096 |
19395 |
19437 |
- |
WHAM2_TM-int |
LTR/Gypsy |
scaffold9096 |
19678 |
19719 |
+ |
(TTTCTTT)n |
Simple_repeat |
scaffold9096 |
19998 |
20034 |
+ |
A-rich |
Low_complexity |
scaffold9096 |
20576 |
20614 |
+ |
(GGCC)n |
Simple_repeat |
scaffold9096 |
21721 |
22111 |
- |
PIGY-I_PS |
LTR/Gypsy |
scaffold9096 |
22208 |
22415 |
- |
RS6781 |
Unspecified |
scaffold9096 |
23247 |
23354 |
- |
PIGY-LTR_PS |
LTR/Gypsy |
scaffold9096 |
24376 |
24428 |
+ |
(ATA)n |
Simple_repeat |
scaffold9096 |
24678 |
24714 |
+ |
(GGCC)n |
Simple_repeat |
scaffold9096 |
25071 |
25196 |
+ |
hAT-17_ZM |
DNA/hAT-Ac |
scaffold9096 |
25875 |
26009 |
- |
hAT-17_ZM |
DNA/hAT-Ac |
scaffold9096 |
26360 |
27019 |
+ |
RS265 |
Unspecified |
scaffold9096 |
27058 |
28040 |
+ |
RS265 |
Unspecified |
scaffold9096 |
28485 |
28874 |
+ |
LINE |
LINE(TransposonPSI) |
scaffold9096 |
28973 |
29271 |
- |
PL339 |
Unspecified |
scaffold9096 |
30942 |
30960 |
+ |
(CAA)n |
Simple_repeat |
scaffold9096 |
31211 |
31239 |
+ |
(CTAGG)n |
Simple_repeat |
scaffold9096 |
31777 |
31822 |
+ |
A-rich |
Low_complexity |
scaffold9096 |
32340 |
32945 |
- |
MEGY-I_MT |
LTR/Gypsy |
scaffold9096 |
33142 |
33778 |
+ |
RS661 |
Unspecified |
scaffold9096 |
34111 |
34275 |
- |
MEGY-I_MT |
LTR/Gypsy |
scaffold9096 |
34904 |
34930 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
scaffold9096 |
36608 |
36903 |
- |
RS190 |
Unspecified |
scaffold9096 |
36905 |
37273 |
- |
PL599 |
Unspecified |
scaffold9096 |
37273 |
37528 |
+ |
PL564 |
Unspecified |
scaffold9096 |
38717 |
38755 |
+ |
(T)n |
Simple_repeat |
scaffold9096 |
43493 |
43529 |
+ |
(TTTATTT)n |
Simple_repeat |
scaffold9096 |
44084 |
44118 |
+ |
(T)n |
Simple_repeat |
scaffold9096 |
44763 |
44796 |
+ |
(ACCA)n |
Simple_repeat |
scaffold9096 |
45260 |
45288 |
+ |
G-rich |
Low_complexity |
scaffold9096 |
46159 |
46238 |
- |
RS202 |
Unspecified |
scaffold9096 |
46494 |
46519 |
+ |
(A)n |
Simple_repeat |
scaffold9096 |
47003 |
47041 |
+ |
(ATTAAC)n |
Simple_repeat |
scaffold9096 |
47764 |
47782 |
+ |
(T)n |
Simple_repeat |
scaffold9096 |
47795 |
48158 |
+ |
RS221 |
Unspecified |
scaffold9096 |
48478 |
48738 |
+ |
RS26 |
Unspecified |
scaffold9096 |
49306 |
49343 |
+ |
(ATTTCAA)n |
Simple_repeat |
scaffold9096 |
49772 |
49823 |
+ |
(ATTTGAA)n |
Simple_repeat |
scaffold9096 |
50560 |
50593 |
+ |
(A)n |
Simple_repeat |
scaffold9096 |
50711 |
50736 |
+ |
(A)n |
Simple_repeat |
scaffold9096 |
51383 |
51410 |
+ |
(A)n |
Simple_repeat |
scaffold9096 |
51618 |
51707 |
- |
RS934 |
Unspecified |
scaffold9096 |
56311 |
56425 |
+ |
RS813 |
Unspecified |
scaffold9096 |
56395 |
57095 |
- |
RS437 |
Unspecified |
scaffold9096 |
57096 |
57756 |
- |
RS437 |
Unspecified |
scaffold9096 |
57759 |
58783 |
- |
RS166 |
Unspecified |
scaffold9096 |
58506 |
59365 |
+ |
RS225 |
Unspecified |
scaffold9096 |
59252 |
59416 |
+ |
RS2800 |
Unspecified |
scaffold9096 |
61780 |
61873 |
- |
RS934 |
Unspecified |
scaffold9096 |
62531 |
62588 |
- |
LINE1-66_SBi |
LINE/L1 |
scaffold9096 |
63028 |
63053 |
+ |
(ATT)n |
Simple_repeat |
scaffold9096 |
63119 |
63157 |
+ |
(A)n |
Simple_repeat |
scaffold9096 |
63682 |
63957 |
+ |
RS2097 |
Unspecified |
scaffold9096 |
63791 |
64085 |
+ |
RS5235 |
Unspecified |
scaffold9096 |
64078 |
64186 |
+ |
A-rich |
Low_complexity |
scaffold9096 |
64268 |
64298 |
+ |
GA-rich |
Low_complexity |
scaffold9096 |
64359 |
64375 |
+ |
(T)n |
Simple_repeat |
scaffold9096 |
64449 |
64530 |
+ |
(TAT)n |
Simple_repeat |
scaffold9096 |
64841 |
64889 |
+ |
(A)n |
Simple_repeat |
scaffold9096 |
65384 |
65497 |
+ |
(TATTT)n |
Simple_repeat |
scaffold9096 |
65561 |
65628 |
+ |
(TAA)n |
Simple_repeat |
scaffold9096 |
66997 |
67034 |
+ |
(TTTA)n |
Simple_repeat |
scaffold9096 |
67480 |
67750 |
- |
RS10 |
Unspecified |
scaffold9096 |
68009 |
68055 |
+ |
(TAATAC)n |
Simple_repeat |
scaffold9096 |
68643 |
68823 |
+ |
RS873 |
Unspecified |
scaffold9096 |
69015 |
69222 |
+ |
RS29 |
Unspecified |
scaffold9096 |
69592 |
69850 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold9096 |
70288 |
70333 |
+ |
(TTTAA)n |
Simple_repeat |
scaffold9096 |
70476 |
70506 |
+ |
(GAGCTC)n |
Simple_repeat |
scaffold9096 |
70509 |
70526 |
+ |
(T)n |
Simple_repeat |
scaffold9096 |
70528 |
70641 |
- |
DS-RICE3N |
DNA/hAT-Ac |
scaffold9096 |
70681 |
70702 |
+ |
(A)n |
Simple_repeat |
scaffold9096 |
71536 |
71572 |
+ |
(GAACT)n |
Simple_repeat |
scaffold9096 |
74871 |
74940 |
+ |
(CTT)n |
Simple_repeat |
scaffold9096 |
76970 |
77030 |
- |
Ogre-MT3_I-int |
LTR/Gypsy |
scaffold9096 |
77031 |
77086 |
+ |
(T)n |
Simple_repeat |
scaffold9096 |
77117 |
77212 |
- |
PIGY-I_PS |
LTR/Gypsy |
scaffold9096 |
77528 |
77587 |
+ |
(T)n |
Simple_repeat |
scaffold9096 |
77728 |
77781 |
- |
Alfare1_I-int |
LTR/Copia? |
scaffold9096 |
78349 |
78381 |
+ |
A-rich |
Low_complexity |
scaffold9096 |
78885 |
78918 |
+ |
(GAACA)n |
Simple_repeat |
scaffold9096 |
79327 |
79742 |
+ |
PL903 |
Unspecified |
scaffold9096 |
79793 |
79864 |
+ |
(TCA)n |
Simple_repeat |
scaffold9096 |
80710 |
80845 |
+ |
PL241 |
Unspecified |
scaffold9096 |
82496 |
83162 |
+ |
RS2084 |
Unspecified |
scaffold9096 |
83859 |
83914 |
+ |
Gypsy-21_ST-I |
LTR/Gypsy |
scaffold9096 |
85217 |
85298 |
+ |
Gypsy-21_ST-I |
LTR/Gypsy |
scaffold9096 |
86171 |
86273 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
scaffold9096 |
86668 |
86708 |
+ |
(TTCAAC)n |
Simple_repeat |
scaffold9096 |
86943 |
87279 |
+ |
RS5888 |
Unspecified |
scaffold9096 |
90038 |
90101 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
scaffold9096 |
90620 |
90660 |
+ |
(ATACA)n |
Simple_repeat |
scaffold9096 |
90687 |
90733 |
+ |
(ATACATA)n |
Simple_repeat |
scaffold9096 |
92925 |
92975 |
+ |
A-rich |
Low_complexity |