scaffold942 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold942 |
1 |
120 |
- |
RS5693 |
Unspecified |
| scaffold942 |
156 |
686 |
- |
PL329 |
Unspecified |
| scaffold942 |
2185 |
2247 |
- |
PL322 |
Unspecified |
| scaffold942 |
2316 |
2379 |
+ |
(TTA)n |
Simple_repeat |
| scaffold942 |
2492 |
2852 |
+ |
RS539 |
Unspecified |
| scaffold942 |
3266 |
3294 |
+ |
(TAT)n |
Simple_repeat |
| scaffold942 |
4166 |
4349 |
+ |
RS1292 |
Unspecified |
| scaffold942 |
4491 |
4516 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
4676 |
4697 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
5052 |
5253 |
+ |
RS5771 |
Unspecified |
| scaffold942 |
5320 |
5369 |
+ |
(AAT)n |
Simple_repeat |
| scaffold942 |
5915 |
5989 |
+ |
RS622 |
Unspecified |
| scaffold942 |
6416 |
6442 |
+ |
(TAGAT)n |
Simple_repeat |
| scaffold942 |
6416 |
6507 |
+ |
(TAGAT)n |
Simple_repeat |
| scaffold942 |
6434 |
6507 |
- |
RS4 |
Unspecified |
| scaffold942 |
6509 |
6616 |
+ |
RS5698 |
Unspecified |
| scaffold942 |
7440 |
7617 |
- |
RS5 |
Unspecified |
| scaffold942 |
7773 |
7931 |
+ |
RS1848 |
Unspecified |
| scaffold942 |
8114 |
8151 |
+ |
G-rich |
Low_complexity |
| scaffold942 |
8487 |
8511 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
8512 |
8535 |
+ |
(TATT)n |
Simple_repeat |
| scaffold942 |
8568 |
8587 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
8953 |
9071 |
- |
RS15138 |
Unspecified |
| scaffold942 |
8974 |
9240 |
- |
RS237 |
Unspecified |
| scaffold942 |
9358 |
9623 |
+ |
RS106 |
Unspecified |
| scaffold942 |
9628 |
9665 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
10207 |
10268 |
+ |
(TTA)n |
Simple_repeat |
| scaffold942 |
12262 |
12291 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold942 |
12755 |
13003 |
- |
RS16888 |
Unspecified |
| scaffold942 |
13589 |
13623 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
14123 |
14182 |
- |
PL754 |
Unspecified |
| scaffold942 |
17681 |
17721 |
+ |
(TCCACC)n |
Simple_repeat |
| scaffold942 |
18127 |
18318 |
- |
RS5140 |
Unspecified |
| scaffold942 |
18316 |
18411 |
+ |
RS16382 |
Unspecified |
| scaffold942 |
18466 |
18863 |
- |
RS5658 |
Unspecified |
| scaffold942 |
18901 |
22372 |
- |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold942 |
22533 |
23037 |
- |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold942 |
23027 |
23401 |
- |
RS5140 |
Unspecified |
| scaffold942 |
23411 |
23808 |
- |
RS5658 |
Unspecified |
| scaffold942 |
24123 |
24242 |
+ |
(ATA)n |
Simple_repeat |
| scaffold942 |
24245 |
24340 |
+ |
(ATT)n |
Simple_repeat |
| scaffold942 |
24773 |
24858 |
+ |
(TAT)n |
Simple_repeat |
| scaffold942 |
25273 |
25398 |
+ |
(ATA)n |
Simple_repeat |
| scaffold942 |
25273 |
25332 |
+ |
(ATA)n |
Simple_repeat |
| scaffold942 |
25322 |
25398 |
+ |
PL396 |
Unspecified |
| scaffold942 |
25414 |
25542 |
+ |
RS5172 |
Unspecified |
| scaffold942 |
28653 |
28677 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
28701 |
28882 |
+ |
RS4054 |
Unspecified |
| scaffold942 |
29117 |
29400 |
- |
hAT-20_Mad |
DNA/hAT-Ac |
| scaffold942 |
29594 |
30768 |
- |
hAT-3_PTr |
DNA/hAT-Ac |
| scaffold942 |
30844 |
31081 |
+ |
RS13528 |
Unspecified |
| scaffold942 |
31095 |
31200 |
- |
RS2290 |
Unspecified |
| scaffold942 |
31899 |
31915 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
32120 |
32497 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold942 |
32512 |
32964 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold942 |
35013 |
35208 |
+ |
(TAA)n |
Simple_repeat |
| scaffold942 |
35718 |
35743 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold942 |
35827 |
36191 |
+ |
RS8 |
Unspecified |
| scaffold942 |
36334 |
36374 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
36878 |
36998 |
+ |
RS16382 |
Unspecified |
| scaffold942 |
37985 |
38024 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold942 |
39354 |
39613 |
+ |
RS26 |
Unspecified |
| scaffold942 |
39765 |
39794 |
+ |
(AATTCT)n |
Simple_repeat |
| scaffold942 |
39830 |
39856 |
+ |
(AAATTG)n |
Simple_repeat |
| scaffold942 |
40100 |
40275 |
+ |
RS43 |
Unspecified |
| scaffold942 |
40505 |
41119 |
+ |
(AGCTGAA)n |
Simple_repeat |
| scaffold942 |
40505 |
40573 |
+ |
(AGCTGAA)n |
Simple_repeat |
| scaffold942 |
40547 |
41119 |
+ |
RS204 |
Unspecified |
| scaffold942 |
41118 |
41179 |
- |
PL501 |
Unspecified |
| scaffold942 |
41156 |
41232 |
- |
PL501 |
Unspecified |
| scaffold942 |
41156 |
41221 |
+ |
PL501 |
Unspecified |
| scaffold942 |
41214 |
41390 |
+ |
PL565 |
Unspecified |
| scaffold942 |
43029 |
43063 |
+ |
(TATC)n |
Simple_repeat |
| scaffold942 |
43334 |
43372 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold942 |
44111 |
44142 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold942 |
45598 |
45647 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
46134 |
46156 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
48924 |
49156 |
- |
PL271 |
Unspecified |
| scaffold942 |
49312 |
49508 |
- |
RS369 |
Unspecified |
| scaffold942 |
50812 |
50995 |
+ |
RS846 |
Unspecified |
| scaffold942 |
50868 |
50995 |
- |
RS326 |
Unspecified |
| scaffold942 |
51396 |
51914 |
- |
RS1275 |
Unspecified |
| scaffold942 |
51915 |
53917 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold942 |
54137 |
54352 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold942 |
54835 |
55082 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold942 |
55270 |
55354 |
- |
RS1200 |
Unspecified |
| scaffold942 |
55500 |
55783 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold942 |
55784 |
55837 |
+ |
(ACAATA)n |
Simple_repeat |
| scaffold942 |
56282 |
56385 |
- |
RS12441 |
Unspecified |
| scaffold942 |
56918 |
57154 |
+ |
(AT)n |
Simple_repeat |
| scaffold942 |
57115 |
57154 |
+ |
(AT)n |
Simple_repeat |
| scaffold942 |
58787 |
59031 |
- |
PL565 |
Unspecified |
| scaffold942 |
58789 |
59065 |
- |
RS539 |
Unspecified |
| scaffold942 |
59066 |
59508 |
- |
PL2 |
Unspecified |
| scaffold942 |
59678 |
59738 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold942 |
59762 |
59825 |
+ |
(ATA)n |
Simple_repeat |
| scaffold942 |
59762 |
59999 |
+ |
(ATA)n |
Simple_repeat |
| scaffold942 |
59796 |
59999 |
+ |
PL619 |
Unspecified |
| scaffold942 |
60441 |
60467 |
+ |
(TTTCAA)n |
Simple_repeat |
| scaffold942 |
60684 |
60927 |
- |
RS26 |
Unspecified |
| scaffold942 |
62225 |
62262 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold942 |
63912 |
63995 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
64115 |
64143 |
+ |
(TCT)n |
Simple_repeat |
| scaffold942 |
64556 |
64594 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold942 |
64641 |
64757 |
+ |
(GTTGAAT)n |
Simple_repeat |
| scaffold942 |
65512 |
66083 |
+ |
PL8 |
Unspecified |
| scaffold942 |
66429 |
66468 |
+ |
RS228 |
Unspecified |
| scaffold942 |
66496 |
66584 |
+ |
RS5063 |
Unspecified |
| scaffold942 |
66627 |
66873 |
+ |
RS5063 |
Unspecified |
| scaffold942 |
67118 |
67247 |
+ |
(GTCGG)n |
Simple_repeat |
| scaffold942 |
67869 |
68088 |
- |
RS4116 |
Unspecified |
| scaffold942 |
68262 |
68299 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold942 |
68491 |
68696 |
- |
PL459 |
Unspecified |
| scaffold942 |
68690 |
70027 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold942 |
70043 |
70158 |
- |
RS8 |
Unspecified |
| scaffold942 |
70220 |
70252 |
+ |
(TCCTT)n |
Simple_repeat |
| scaffold942 |
70626 |
70807 |
+ |
RS395 |
Unspecified |
| scaffold942 |
73240 |
73277 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
73286 |
73457 |
- |
RS7686 |
Unspecified |
| scaffold942 |
73936 |
73965 |
+ |
(ATC)n |
Simple_repeat |
| scaffold942 |
74042 |
74085 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
74588 |
74645 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
75386 |
75441 |
+ |
(AATCAAT)n |
Simple_repeat |
| scaffold942 |
75591 |
76069 |
+ |
RS751 |
Unspecified |
| scaffold942 |
76074 |
76439 |
- |
RS9898 |
Unspecified |
| scaffold942 |
76534 |
76583 |
+ |
GA-rich |
Low_complexity |
| scaffold942 |
76608 |
76648 |
+ |
GA-rich |
Low_complexity |
| scaffold942 |
76728 |
76923 |
+ |
RS9898 |
Unspecified |
| scaffold942 |
76796 |
76944 |
- |
RS768 |
Unspecified |
| scaffold942 |
78520 |
78572 |
+ |
(A)n |
Simple_repeat |
| scaffold942 |
82155 |
82216 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
84861 |
84927 |
+ |
(CAA)n |
Simple_repeat |
| scaffold942 |
85135 |
85176 |
+ |
(CGG)n |
Simple_repeat |
| scaffold942 |
85385 |
85718 |
- |
PL3 |
Unspecified |
| scaffold942 |
85723 |
85862 |
+ |
RS34 |
Unspecified |
| scaffold942 |
86231 |
86286 |
+ |
(TTGTATT)n |
Simple_repeat |
| scaffold942 |
86465 |
86627 |
- |
RS221 |
Unspecified |
| scaffold942 |
86623 |
86758 |
+ |
PL178 |
Unspecified |
| scaffold942 |
87236 |
87596 |
- |
PL352 |
Unspecified |
| scaffold942 |
87666 |
87726 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold942 |
88432 |
88462 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
88788 |
88821 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
88822 |
88834 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold942 |
89106 |
89130 |
+ |
(A)n |
Simple_repeat |
| scaffold942 |
89251 |
89309 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
89526 |
89571 |
+ |
(CCCTC)n |
Simple_repeat |
| scaffold942 |
89638 |
89722 |
+ |
(GAGATGA)n |
Simple_repeat |
| scaffold942 |
90007 |
90060 |
+ |
(ACAT)n |
Simple_repeat |
| scaffold942 |
90062 |
90216 |
- |
RS325 |
Unspecified |
| scaffold942 |
90288 |
90427 |
- |
PL859 |
Unspecified |
| scaffold942 |
90306 |
90568 |
- |
RS1919 |
Unspecified |
| scaffold942 |
90961 |
91150 |
- |
PL859 |
Unspecified |
| scaffold942 |
91021 |
91150 |
+ |
RS4864 |
Unspecified |
| scaffold942 |
91897 |
91936 |
+ |
(AAT)n |
Simple_repeat |
| scaffold942 |
93097 |
93150 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
94032 |
94170 |
+ |
RS3041 |
Unspecified |
| scaffold942 |
95813 |
95998 |
+ |
PL871 |
Unspecified |
| scaffold942 |
96781 |
96823 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
98177 |
98215 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
98845 |
98875 |
+ |
(AGA)n |
Simple_repeat |
| scaffold942 |
99024 |
99042 |
+ |
(TAC)n |
Simple_repeat |
| scaffold942 |
99689 |
99876 |
- |
RS2999 |
Unspecified |
| scaffold942 |
100197 |
100217 |
+ |
(TCA)n |
Simple_repeat |
| scaffold942 |
100218 |
100269 |
+ |
(TCT)n |
Simple_repeat |
| scaffold942 |
100944 |
101005 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold942 |
101438 |
101456 |
+ |
(A)n |
Simple_repeat |
| scaffold942 |
101601 |
101643 |
+ |
G-rich |
Low_complexity |
| scaffold942 |
101725 |
101751 |
+ |
(GGC)n |
Simple_repeat |
| scaffold942 |
101846 |
102044 |
+ |
(TAT)n |
Simple_repeat |
| scaffold942 |
102372 |
102429 |
+ |
RS2401 |
Unspecified |
| scaffold942 |
102844 |
102904 |
+ |
(TCAAGT)n |
Simple_repeat |
| scaffold942 |
102907 |
102959 |
+ |
(ACA)n |
Simple_repeat |
| scaffold942 |
103365 |
103759 |
- |
RS1902 |
Unspecified |
| scaffold942 |
103760 |
104069 |
- |
RS6506 |
Unspecified |
| scaffold942 |
104318 |
104512 |
- |
RS482 |
Unspecified |
| scaffold942 |
104504 |
105047 |
- |
RS1230 |
Unspecified |
| scaffold942 |
105025 |
105133 |
- |
RS1230 |
Unspecified |
| scaffold942 |
105168 |
105662 |
+ |
PL489 |
Unspecified |
| scaffold942 |
105168 |
105753 |
+ |
RS695 |
Unspecified |
| scaffold942 |
105761 |
105916 |
+ |
RS6459 |
Unspecified |
| scaffold942 |
107542 |
108106 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold942 |
108393 |
108720 |
+ |
RS3403 |
Unspecified |
| scaffold942 |
109202 |
109244 |
+ |
GA-rich |
Low_complexity |
| scaffold942 |
109595 |
109653 |
- |
hAT-4_PTr |
DNA/hAT-Tip100 |
| scaffold942 |
109709 |
111951 |
- |
HAT-12_Mad |
DNA/hAT-Tip100 |
| scaffold942 |
112452 |
112498 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold942 |
113375 |
113453 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
114375 |
114410 |
+ |
(CGGC)n |
Simple_repeat |
| scaffold942 |
114990 |
115411 |
+ |
RS1214 |
Unspecified |
| scaffold942 |
115035 |
115769 |
- |
RS1879 |
Unspecified |
| scaffold942 |
115766 |
115795 |
+ |
PL808 |
Unspecified |
| scaffold942 |
116594 |
116637 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold942 |
117212 |
118111 |
- |
PL129 |
Unspecified |
| scaffold942 |
118106 |
118443 |
- |
PL686 |
Unspecified |
| scaffold942 |
118443 |
119061 |
- |
RS1596 |
Unspecified |
| scaffold942 |
120444 |
120485 |
+ |
(ATCAT)n |
Simple_repeat |
| scaffold942 |
121189 |
121565 |
- |
RS482 |
Unspecified |
| scaffold942 |
122579 |
122628 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold942 |
122834 |
122914 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold942 |
124150 |
124340 |
+ |
(TGT)n |
Simple_repeat |
| scaffold942 |
125305 |
125486 |
- |
RS178 |
Unspecified |
| scaffold942 |
125563 |
125609 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
127331 |
127365 |
+ |
(TATT)n |
Simple_repeat |
| scaffold942 |
127466 |
127492 |
+ |
(T)n |
Simple_repeat |
| scaffold942 |
127646 |
127711 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
127773 |
127823 |
+ |
(TA)n |
Simple_repeat |
| scaffold942 |
128262 |
131467 |
- |
RLG_scAle_2_1-I |
LTR/Copia |
| scaffold942 |
132955 |
132984 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold942 |
133660 |
133721 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold942 |
135212 |
135282 |
+ |
A-rich |
Low_complexity |
| scaffold942 |
138247 |
138328 |
+ |
(CACA)n |
Simple_repeat |
| scaffold942 |
139451 |
139520 |
+ |
(A)n |
Simple_repeat |
| scaffold942 |
145414 |
145446 |
+ |
(TAA)n |
Simple_repeat |
| scaffold942 |
149346 |
149402 |
+ |
(TTTTTAT)n |
Simple_repeat |
| scaffold942 |
149765 |
149816 |
+ |
(ATC)n |
Simple_repeat |
| scaffold942 |
150054 |
150105 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold942 |
150258 |
150282 |
+ |
(A)n |
Simple_repeat |
| scaffold942 |
150310 |
150368 |
+ |
PL322 |
Unspecified |
| scaffold942 |
150368 |
150801 |
+ |
PL565 |
Unspecified |
| scaffold942 |
150801 |
150963 |
- |
PL565 |
Unspecified |
| scaffold942 |
150960 |
151123 |
- |
RS9 |
Unspecified |
| scaffold942 |
151962 |
152013 |
+ |
(ATA)n |
Simple_repeat |
| scaffold942 |
152738 |
152788 |
+ |
(TTGTG)n |
Simple_repeat |
| scaffold942 |
154887 |
155126 |
+ |
RS8148 |
Unspecified |
| scaffold942 |
155017 |
155260 |
- |
RS3847 |
Unspecified |
| scaffold942 |
155284 |
155444 |
- |
RS3847 |
Unspecified |
| scaffold942 |
156741 |
157136 |
- |
RS1216 |
Unspecified |
| scaffold942 |
157100 |
157455 |
- |
RS1216 |
Unspecified |
| scaffold942 |
158018 |
158091 |
+ |
(TTGATTG)n |
Simple_repeat |
| scaffold942 |
158605 |
158658 |
+ |
(TTCATT)n |
Simple_repeat |
| scaffold942 |
160164 |
160372 |
- |
RS13163 |
Unspecified |
| scaffold942 |
160610 |
160896 |
+ |
RS6534 |
Unspecified |