scaffold9490 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold9490 |
536 |
684 |
- |
ATHILA-5_SBi-I |
LTR/Gypsy |
| scaffold9490 |
2088 |
2648 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold9490 |
3810 |
3844 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold9490 |
4402 |
5295 |
+ |
ltr_Roo |
ltr_Roo(TransposonPSI) |
| scaffold9490 |
4412 |
5294 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold9490 |
5335 |
5472 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold9490 |
5674 |
6103 |
+ |
PL580 |
Unspecified |
| scaffold9490 |
7469 |
7534 |
+ |
(TGATGAC)n |
Simple_repeat |
| scaffold9490 |
7570 |
7606 |
+ |
(TGTTTT)n |
Simple_repeat |
| scaffold9490 |
8537 |
10188 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold9490 |
19376 |
19429 |
+ |
(CA)n |
Simple_repeat |
| scaffold9490 |
21321 |
21442 |
+ |
RS3817 |
Unspecified |
| scaffold9490 |
21595 |
21773 |
- |
RS1307 |
Unspecified |
| scaffold9490 |
22441 |
22484 |
+ |
(TATTAT)n |
Simple_repeat |
| scaffold9490 |
22840 |
22861 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
25124 |
25255 |
+ |
RS17924 |
Unspecified |
| scaffold9490 |
26909 |
26943 |
+ |
(AAC)n |
Simple_repeat |
| scaffold9490 |
28004 |
28057 |
+ |
(TAA)n |
Simple_repeat |
| scaffold9490 |
28352 |
28375 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
29282 |
29474 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold9490 |
30228 |
30349 |
+ |
RS1 |
Unspecified |
| scaffold9490 |
31141 |
31180 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold9490 |
31281 |
31376 |
- |
PL147 |
Unspecified |
| scaffold9490 |
31456 |
31627 |
- |
RS3973 |
Unspecified |
| scaffold9490 |
31456 |
31601 |
- |
RS3128 |
Unspecified |
| scaffold9490 |
31826 |
31863 |
+ |
(TTCTCTC)n |
Simple_repeat |
| scaffold9490 |
32272 |
32307 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
32313 |
32344 |
+ |
(CCACCG)n |
Simple_repeat |
| scaffold9490 |
32345 |
32394 |
+ |
(GCC)n |
Simple_repeat |
| scaffold9490 |
32400 |
32460 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
32667 |
32753 |
- |
PL93 |
Unspecified |
| scaffold9490 |
33523 |
33606 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold9490 |
33578 |
33610 |
+ |
(ATT)n |
Simple_repeat |
| scaffold9490 |
33882 |
33906 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
35235 |
35498 |
- |
RS356 |
Unspecified |
| scaffold9490 |
36232 |
36380 |
+ |
RS894 |
Unspecified |
| scaffold9490 |
36367 |
36536 |
+ |
RS894 |
Unspecified |
| scaffold9490 |
36551 |
36623 |
- |
RS17600 |
Unspecified |
| scaffold9490 |
36624 |
36762 |
- |
RS17600 |
Unspecified |
| scaffold9490 |
37366 |
37390 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
37625 |
37649 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
38272 |
38306 |
+ |
(AATT)n |
Simple_repeat |
| scaffold9490 |
38330 |
38699 |
+ |
RS9711 |
Unspecified |
| scaffold9490 |
39081 |
39132 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold9490 |
42220 |
42272 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
42302 |
42683 |
+ |
RS172 |
Unspecified |
| scaffold9490 |
43875 |
43899 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
44132 |
44279 |
- |
RS6040 |
Unspecified |
| scaffold9490 |
44142 |
44296 |
- |
RS2956 |
Unspecified |
| scaffold9490 |
44314 |
44371 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
45281 |
45404 |
- |
RS365 |
Unspecified |
| scaffold9490 |
45406 |
45508 |
+ |
RS3513 |
Unspecified |
| scaffold9490 |
45659 |
45684 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
50355 |
50389 |
+ |
(ATCAT)n |
Simple_repeat |
| scaffold9490 |
50881 |
50911 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
51172 |
51236 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold9490 |
51460 |
51478 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
51756 |
51797 |
+ |
(TACA)n |
Simple_repeat |
| scaffold9490 |
52050 |
52082 |
+ |
(TGG)n |
Simple_repeat |
| scaffold9490 |
53601 |
53639 |
+ |
(CAGCAC)n |
Simple_repeat |
| scaffold9490 |
54271 |
54347 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold9490 |
54974 |
55023 |
+ |
(TACGTAC)n |
Simple_repeat |
| scaffold9490 |
55961 |
55998 |
+ |
(TTGAG)n |
Simple_repeat |
| scaffold9490 |
56322 |
56354 |
+ |
(AT)n |
Simple_repeat |
| scaffold9490 |
56840 |
56872 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
57357 |
57398 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
58618 |
58752 |
+ |
RS16831 |
Unspecified |
| scaffold9490 |
58649 |
58870 |
- |
RS47 |
Unspecified |
| scaffold9490 |
60825 |
60860 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
62035 |
62064 |
+ |
(TTTCAG)n |
Simple_repeat |
| scaffold9490 |
62398 |
62437 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
65703 |
65731 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
66703 |
66729 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
67017 |
67131 |
+ |
RS16738 |
Unspecified |
| scaffold9490 |
68016 |
68130 |
+ |
RS16738 |
Unspecified |
| scaffold9490 |
68917 |
68951 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
69976 |
69999 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
71430 |
71474 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
72263 |
72539 |
- |
RS15570 |
Unspecified |
| scaffold9490 |
72592 |
72814 |
- |
RS15311 |
Unspecified |
| scaffold9490 |
73175 |
73415 |
- |
RS15455 |
Unspecified |
| scaffold9490 |
73467 |
73572 |
- |
RS18210 |
Unspecified |
| scaffold9490 |
73943 |
74002 |
+ |
(TCACAG)n |
Simple_repeat |
| scaffold9490 |
74227 |
74270 |
+ |
(TTTCAA)n |
Simple_repeat |
| scaffold9490 |
74268 |
74297 |
- |
RS14869 |
Unspecified |
| scaffold9490 |
74293 |
74413 |
+ |
RS557 |
Unspecified |
| scaffold9490 |
74634 |
74652 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
75516 |
75650 |
- |
RS15009 |
Unspecified |
| scaffold9490 |
76241 |
76658 |
- |
RS17604 |
Unspecified |
| scaffold9490 |
77203 |
77310 |
- |
RS15186 |
Unspecified |
| scaffold9490 |
77910 |
77944 |
+ |
(TCACT)n |
Simple_repeat |
| scaffold9490 |
78544 |
78657 |
- |
RS15110 |
Unspecified |
| scaffold9490 |
79149 |
79325 |
+ |
RS573 |
Unspecified |
| scaffold9490 |
79433 |
79642 |
- |
RS14161 |
Unspecified |
| scaffold9490 |
79730 |
79753 |
+ |
(CTTT)n |
Simple_repeat |
| scaffold9490 |
79953 |
80162 |
- |
RS14161 |
Unspecified |
| scaffold9490 |
80871 |
81016 |
- |
RS16605 |
Unspecified |
| scaffold9490 |
81490 |
81601 |
- |
RS15563 |
Unspecified |
| scaffold9490 |
82946 |
83310 |
+ |
RS8 |
Unspecified |
| scaffold9490 |
83386 |
83763 |
+ |
RS8 |
Unspecified |
| scaffold9490 |
83899 |
84054 |
+ |
RS614 |
Unspecified |
| scaffold9490 |
84100 |
84259 |
+ |
RS240 |
Unspecified |
| scaffold9490 |
84256 |
84306 |
+ |
PL293 |
Unspecified |
| scaffold9490 |
86009 |
86075 |
+ |
PL293 |
Unspecified |
| scaffold9490 |
86071 |
86151 |
- |
RS43 |
Unspecified |
| scaffold9490 |
86158 |
86203 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
87025 |
87479 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
87025 |
87046 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
87043 |
87479 |
- |
RS283 |
Unspecified |
| scaffold9490 |
87812 |
87855 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold9490 |
87905 |
87929 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
91533 |
91806 |
- |
RS102 |
Unspecified |
| scaffold9490 |
91593 |
91824 |
- |
RS7234 |
Unspecified |
| scaffold9490 |
91806 |
91909 |
- |
RS7234 |
Unspecified |
| scaffold9490 |
92210 |
92336 |
+ |
RS16382 |
Unspecified |
| scaffold9490 |
92518 |
92559 |
+ |
GA-rich |
Low_complexity |
| scaffold9490 |
92678 |
94273 |
- |
Copia-1_AT-I |
LTR/Copia |
| scaffold9490 |
94731 |
94744 |
+ |
Copia1-PTR_I-int |
LTR/Copia |
| scaffold9490 |
94745 |
95435 |
- |
ATCopia22I |
LTR/Copia |
| scaffold9490 |
95436 |
95505 |
+ |
Copia1-PTR_I-int |
LTR/Copia |
| scaffold9490 |
95801 |
95860 |
- |
Copia-50_VV-I |
LTR/Copia |
| scaffold9490 |
95905 |
96016 |
- |
Copia-50_VV-I |
LTR/Copia |
| scaffold9490 |
96180 |
96202 |
+ |
(GCT)n |
Simple_repeat |
| scaffold9490 |
96346 |
97182 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9490 |
96890 |
96990 |
- |
Copia-50_VV-I |
LTR/Copia |
| scaffold9490 |
97684 |
97725 |
+ |
GA-rich |
Low_complexity |
| scaffold9490 |
98238 |
98521 |
+ |
PL307 |
Unspecified |
| scaffold9490 |
98869 |
99138 |
+ |
RS1984 |
Unspecified |
| scaffold9490 |
99154 |
99190 |
+ |
(GTGGTG)n |
Simple_repeat |
| scaffold9490 |
99240 |
99409 |
- |
RS4865 |
Unspecified |
| scaffold9490 |
99333 |
99561 |
- |
RS3173 |
Unspecified |
| scaffold9490 |
99415 |
99690 |
- |
RS4546 |
Unspecified |
| scaffold9490 |
100294 |
100330 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
102168 |
102204 |
- |
RS1 |
Unspecified |
| scaffold9490 |
102174 |
102289 |
+ |
RS1 |
Unspecified |
| scaffold9490 |
104124 |
104144 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
109476 |
109496 |
+ |
(GA)n |
Simple_repeat |
| scaffold9490 |
109598 |
109671 |
+ |
RS16240 |
Unspecified |
| scaffold9490 |
113017 |
113082 |
+ |
GA-rich |
Low_complexity |
| scaffold9490 |
113461 |
113490 |
+ |
(AAAAG)n |
Simple_repeat |
| scaffold9490 |
113930 |
114050 |
+ |
RS3123 |
Unspecified |
| scaffold9490 |
114778 |
114827 |
+ |
(TGG)n |
Simple_repeat |
| scaffold9490 |
115063 |
115089 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
115300 |
115338 |
+ |
(GGT)n |
Simple_repeat |
| scaffold9490 |
115405 |
115864 |
- |
RS35 |
Unspecified |
| scaffold9490 |
116745 |
116799 |
+ |
(ATA)n |
Simple_repeat |
| scaffold9490 |
116800 |
116820 |
+ |
(CAA)n |
Simple_repeat |
| scaffold9490 |
117293 |
117318 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
117961 |
118015 |
- |
LINE1-44_ZM |
LINE/L1 |
| scaffold9490 |
118852 |
118857 |
+ |
(ATCTAT)n |
Simple_repeat |
| scaffold9490 |
118858 |
118901 |
+ |
(ATCT)n |
Simple_repeat |
| scaffold9490 |
118974 |
119025 |
+ |
(ATTTATA)n |
Simple_repeat |
| scaffold9490 |
119042 |
119068 |
+ |
(TAGA)n |
Simple_repeat |
| scaffold9490 |
119333 |
119412 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
119333 |
119615 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
119392 |
119615 |
+ |
PL836 |
Unspecified |
| scaffold9490 |
122942 |
122981 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold9490 |
123333 |
123363 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
123918 |
123946 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
124618 |
124658 |
+ |
(TTTTATT)n |
Simple_repeat |
| scaffold9490 |
124888 |
125155 |
- |
RS2585 |
Unspecified |
| scaffold9490 |
125239 |
125373 |
- |
RS1448 |
Unspecified |
| scaffold9490 |
125499 |
125547 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
125592 |
125839 |
- |
RS14814 |
Unspecified |
| scaffold9490 |
127633 |
127657 |
+ |
(AGA)n |
Simple_repeat |
| scaffold9490 |
128237 |
128276 |
+ |
(TAA)n |
Simple_repeat |
| scaffold9490 |
128616 |
128671 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold9490 |
128867 |
128923 |
+ |
PL675 |
Unspecified |
| scaffold9490 |
129566 |
129613 |
+ |
(ATTTC)n |
Simple_repeat |
| scaffold9490 |
129808 |
129889 |
+ |
RS280 |
Unspecified |
| scaffold9490 |
129879 |
130126 |
- |
RS14814 |
Unspecified |
| scaffold9490 |
130643 |
130877 |
- |
RS15272 |
Unspecified |
| scaffold9490 |
131810 |
132029 |
- |
RS15152 |
Unspecified |
| scaffold9490 |
132177 |
132194 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
133290 |
133391 |
- |
RS15218 |
Unspecified |
| scaffold9490 |
133446 |
133737 |
- |
RS16876 |
Unspecified |
| scaffold9490 |
133819 |
134200 |
- |
RS17317 |
Unspecified |
| scaffold9490 |
134488 |
134752 |
- |
RS16883 |
Unspecified |
| scaffold9490 |
138985 |
139016 |
+ |
(AATC)n |
Simple_repeat |
| scaffold9490 |
139116 |
139135 |
+ |
(T)n |
Simple_repeat |
| scaffold9490 |
139740 |
139756 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
140039 |
140109 |
- |
RS4028 |
Unspecified |
| scaffold9490 |
140178 |
140296 |
- |
RS4028 |
Unspecified |
| scaffold9490 |
141791 |
141848 |
- |
LINE1H_MT |
LINE/L1 |
| scaffold9490 |
141828 |
142803 |
- |
LINE1-6_OS |
LINE/L1 |
| scaffold9490 |
142803 |
143621 |
- |
PL761 |
Unspecified |
| scaffold9490 |
142813 |
143776 |
- |
RS218 |
Unspecified |
| scaffold9490 |
144228 |
144647 |
- |
SHALINE10_MT |
LINE/L1 |
| scaffold9490 |
144848 |
144970 |
- |
L1-16_Mad |
LINE/L1 |
| scaffold9490 |
145746 |
146104 |
- |
RS2542 |
Unspecified |
| scaffold9490 |
146036 |
146165 |
+ |
RS2542 |
Unspecified |
| scaffold9490 |
146188 |
146237 |
+ |
(TATTCT)n |
Simple_repeat |
| scaffold9490 |
146337 |
146375 |
+ |
(AT)n |
Simple_repeat |
| scaffold9490 |
146408 |
146879 |
- |
RS12458 |
Unspecified |
| scaffold9490 |
146724 |
147453 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
147415 |
147453 |
+ |
A-rich |
Low_complexity |
| scaffold9490 |
147704 |
147764 |
+ |
RS526 |
Unspecified |
| scaffold9490 |
147861 |
147937 |
+ |
PL531 |
Unspecified |
| scaffold9490 |
148319 |
148366 |
+ |
(TTTTCTA)n |
Simple_repeat |
| scaffold9490 |
148367 |
148378 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold9490 |
149249 |
149457 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold9490 |
149654 |
149844 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold9490 |
150322 |
150450 |
+ |
(CTAGTA)n |
Simple_repeat |
| scaffold9490 |
150322 |
150352 |
+ |
(CTAGTA)n |
Simple_repeat |
| scaffold9490 |
150339 |
150450 |
- |
RS15344 |
Unspecified |
| scaffold9490 |
150557 |
150674 |
- |
RS17357 |
Unspecified |
| scaffold9490 |
150786 |
150901 |
- |
RS16518 |
Unspecified |
| scaffold9490 |
150940 |
150974 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold9490 |
151652 |
151802 |
- |
RS11664 |
Unspecified |
| scaffold9490 |
151837 |
152131 |
- |
RS10729 |
Unspecified |
| scaffold9490 |
152196 |
152458 |
- |
RS15252 |
Unspecified |
| scaffold9490 |
152826 |
153366 |
- |
RS16526 |
Unspecified |
| scaffold9490 |
154957 |
154973 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
154978 |
155161 |
- |
RS15479 |
Unspecified |
| scaffold9490 |
155752 |
155769 |
+ |
(TACAACA)n |
Simple_repeat |
| scaffold9490 |
155770 |
155794 |
+ |
(CATA)n |
Simple_repeat |
| scaffold9490 |
155795 |
155812 |
+ |
(TACAACA)n |
Simple_repeat |
| scaffold9490 |
156331 |
156384 |
+ |
(AATAAC)n |
Simple_repeat |
| scaffold9490 |
156519 |
156544 |
+ |
(A)n |
Simple_repeat |
| scaffold9490 |
157084 |
157131 |
+ |
(TAA)n |
Simple_repeat |
| scaffold9490 |
158447 |
158575 |
- |
RS15756 |
Unspecified |
| scaffold9490 |
159579 |
159691 |
- |
RS17698 |
Unspecified |
| scaffold9490 |
161529 |
161688 |
- |
RS18261 |
Unspecified |
| scaffold9490 |
162330 |
162978 |
- |
RS17904 |
Unspecified |
| scaffold9490 |
163536 |
164122 |
- |
RS1351 |
Unspecified |
| scaffold9490 |
164122 |
164195 |
+ |
RS2859 |
Unspecified |
| scaffold9490 |
164561 |
165274 |
+ |
RS633 |
Unspecified |
| scaffold9490 |
165353 |
165407 |
+ |
(ACCCAC)n |
Simple_repeat |
| scaffold9490 |
165858 |
165898 |
+ |
(GAGGTA)n |
Simple_repeat |
| scaffold9490 |
166046 |
166076 |
+ |
(CTGAC)n |
Simple_repeat |
| scaffold9490 |
167883 |
167986 |
- |
RS750 |
Unspecified |
| scaffold9490 |
168116 |
168151 |
+ |
(ATTTTGT)n |
Simple_repeat |