scaffold9673 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold9673 |
1 |
867 |
+ |
RS397 |
Unspecified |
| scaffold9673 |
142 |
933 |
+ |
RS695 |
Unspecified |
| scaffold9673 |
1450 |
1778 |
+ |
ATHILA-5_SBi-I |
LTR/Gypsy |
| scaffold9673 |
2628 |
3173 |
+ |
ATHILA-5_SBi-I |
LTR/Gypsy |
| scaffold9673 |
3561 |
4140 |
- |
RS5034 |
Unspecified |
| scaffold9673 |
4197 |
4239 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold9673 |
4291 |
4313 |
+ |
(A)n |
Simple_repeat |
| scaffold9673 |
6196 |
6309 |
+ |
RS269 |
Unspecified |
| scaffold9673 |
6309 |
6558 |
- |
RS4338 |
Unspecified |
| scaffold9673 |
7370 |
7471 |
+ |
(AATTTTA)n |
Simple_repeat |
| scaffold9673 |
7741 |
8000 |
- |
RS1 |
Unspecified |
| scaffold9673 |
8199 |
8250 |
+ |
GA-rich |
Low_complexity |
| scaffold9673 |
8324 |
8380 |
+ |
GA-rich |
Low_complexity |
| scaffold9673 |
8497 |
8678 |
+ |
RS79 |
Unspecified |
| scaffold9673 |
8925 |
9051 |
+ |
RS14047 |
Unspecified |
| scaffold9673 |
9490 |
9676 |
+ |
RS12539 |
Unspecified |
| scaffold9673 |
11323 |
12154 |
+ |
PL158 |
Unspecified |
| scaffold9673 |
12591 |
12792 |
- |
RS172 |
Unspecified |
| scaffold9673 |
12831 |
12908 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold9673 |
13182 |
13218 |
+ |
(TT)n |
Simple_repeat |
| scaffold9673 |
13352 |
13862 |
+ |
RS454 |
Unspecified |
| scaffold9673 |
14007 |
14232 |
+ |
RS356 |
Unspecified |
| scaffold9673 |
15096 |
15603 |
- |
RS89 |
Unspecified |
| scaffold9673 |
15900 |
15905 |
+ |
(ATTTCT)n |
Simple_repeat |
| scaffold9673 |
15906 |
15952 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold9673 |
15977 |
16350 |
+ |
RS614 |
Unspecified |
| scaffold9673 |
16501 |
16744 |
- |
RS4 |
Unspecified |
| scaffold9673 |
16831 |
16869 |
+ |
(AATGAA)n |
Simple_repeat |
| scaffold9673 |
17169 |
17282 |
- |
RS738 |
Unspecified |
| scaffold9673 |
17923 |
18239 |
- |
RS1894 |
Unspecified |
| scaffold9673 |
18531 |
18965 |
- |
RS192 |
Unspecified |
| scaffold9673 |
19040 |
19528 |
- |
RS1894 |
Unspecified |
| scaffold9673 |
19583 |
19615 |
+ |
(ATGGTT)n |
Simple_repeat |
| scaffold9673 |
20522 |
21120 |
- |
RS738 |
Unspecified |
| scaffold9673 |
21223 |
21450 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
21556 |
21779 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
21981 |
22027 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
22133 |
22356 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
22801 |
23012 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
23953 |
24146 |
- |
PL413 |
Unspecified |
| scaffold9673 |
23964 |
24168 |
- |
RS370 |
Unspecified |
| scaffold9673 |
24497 |
24519 |
+ |
(A)n |
Simple_repeat |
| scaffold9673 |
24747 |
24787 |
+ |
(TCATCC)n |
Simple_repeat |
| scaffold9673 |
24979 |
25035 |
+ |
(TCC)n |
Simple_repeat |
| scaffold9673 |
25827 |
25869 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
26107 |
26158 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold9673 |
27066 |
27109 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold9673 |
28206 |
28246 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
28357 |
28408 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold9673 |
32321 |
32371 |
+ |
(A)n |
Simple_repeat |
| scaffold9673 |
32488 |
32507 |
+ |
(GA)n |
Simple_repeat |
| scaffold9673 |
32508 |
32526 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
32655 |
32693 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold9673 |
32806 |
32850 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
33042 |
33081 |
+ |
(TATCTA)n |
Simple_repeat |
| scaffold9673 |
33338 |
33508 |
+ |
RS6264 |
Unspecified |
| scaffold9673 |
33664 |
34165 |
+ |
RS1148 |
Unspecified |
| scaffold9673 |
33848 |
34239 |
+ |
RS3454 |
Unspecified |
| scaffold9673 |
34243 |
34979 |
+ |
PL789 |
Unspecified |
| scaffold9673 |
35151 |
35206 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold9673 |
35377 |
35426 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
35720 |
35777 |
+ |
(CTCT)n |
Simple_repeat |
| scaffold9673 |
35839 |
36298 |
+ |
RS1401 |
Unspecified |
| scaffold9673 |
35860 |
36130 |
- |
RS8394 |
Unspecified |
| scaffold9673 |
37723 |
37759 |
+ |
(TCAT)n |
Simple_repeat |
| scaffold9673 |
37780 |
37815 |
+ |
(ATC)n |
Simple_repeat |
| scaffold9673 |
38628 |
38783 |
+ |
RS5855 |
Unspecified |
| scaffold9673 |
39955 |
40032 |
+ |
(TT)n |
Simple_repeat |
| scaffold9673 |
40304 |
41005 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold9673 |
42716 |
42786 |
+ |
(TATATAA)n |
Simple_repeat |
| scaffold9673 |
43356 |
43417 |
+ |
(ATTATGT)n |
Simple_repeat |
| scaffold9673 |
43418 |
43457 |
+ |
(TAA)n |
Simple_repeat |
| scaffold9673 |
44169 |
44241 |
+ |
(AGTGAG)n |
Simple_repeat |
| scaffold9673 |
44268 |
44513 |
+ |
RS2499 |
Unspecified |
| scaffold9673 |
44802 |
44885 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
45163 |
45352 |
- |
RS10526 |
Unspecified |
| scaffold9673 |
45482 |
45553 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
45554 |
45771 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
46342 |
46622 |
- |
RS1632 |
Unspecified |
| scaffold9673 |
46658 |
46971 |
+ |
RS1120 |
Unspecified |
| scaffold9673 |
46658 |
46915 |
- |
RS10387 |
Unspecified |
| scaffold9673 |
46703 |
46921 |
- |
RS3750 |
Unspecified |
| scaffold9673 |
47073 |
47336 |
+ |
RS10 |
Unspecified |
| scaffold9673 |
48123 |
48190 |
+ |
(TTGAA)n |
Simple_repeat |
| scaffold9673 |
48500 |
48576 |
+ |
(TTGATTG)n |
Simple_repeat |
| scaffold9673 |
48620 |
48663 |
+ |
(AGTTG)n |
Simple_repeat |
| scaffold9673 |
48884 |
48919 |
+ |
(TTTTTCA)n |
Simple_repeat |
| scaffold9673 |
49029 |
49085 |
+ |
(TTCAT)n |
Simple_repeat |
| scaffold9673 |
49290 |
49423 |
+ |
RS8312 |
Unspecified |
| scaffold9673 |
49341 |
49567 |
- |
RS439 |
Unspecified |
| scaffold9673 |
49380 |
49630 |
- |
RS439 |
Unspecified |
| scaffold9673 |
51241 |
51416 |
+ |
L1-15_GM |
LINE/L1 |
| scaffold9673 |
51888 |
51949 |
+ |
L1-1_Mad |
LINE/L1 |
| scaffold9673 |
52154 |
53525 |
+ |
L1-1_PTr |
LINE/L1 |
| scaffold9673 |
54335 |
54629 |
- |
RS439 |
Unspecified |
| scaffold9673 |
54707 |
54777 |
+ |
(ACA)n |
Simple_repeat |
| scaffold9673 |
55230 |
55467 |
- |
RS936 |
Unspecified |
| scaffold9673 |
55603 |
55655 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
56507 |
56582 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold9673 |
56584 |
56769 |
+ |
(TTATAC)n |
Simple_repeat |
| scaffold9673 |
56861 |
57305 |
- |
PL866 |
Unspecified |
| scaffold9673 |
57315 |
57363 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold9673 |
58510 |
58586 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold9673 |
58997 |
59031 |
+ |
(TAATGTA)n |
Simple_repeat |
| scaffold9673 |
59262 |
59292 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
59477 |
59515 |
+ |
(TTAGTAA)n |
Simple_repeat |
| scaffold9673 |
59515 |
59549 |
- |
RS1 |
Unspecified |
| scaffold9673 |
59519 |
59780 |
+ |
RS1 |
Unspecified |
| scaffold9673 |
59773 |
60290 |
- |
PL13 |
Unspecified |
| scaffold9673 |
59837 |
60288 |
- |
PL164 |
Unspecified |
| scaffold9673 |
60802 |
60841 |
+ |
(GATTT)n |
Simple_repeat |
| scaffold9673 |
64729 |
64990 |
+ |
RS145 |
Unspecified |
| scaffold9673 |
65664 |
65831 |
- |
hAT-7_PTr |
DNA/hAT-Ac |
| scaffold9673 |
65827 |
65974 |
- |
RS5996 |
Unspecified |
| scaffold9673 |
65846 |
66065 |
+ |
RS510 |
Unspecified |
| scaffold9673 |
66384 |
66480 |
+ |
ATHAT2 |
DNA/hAT-Ac |
| scaffold9673 |
67062 |
67105 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
67104 |
68307 |
- |
hAT |
hAT(TransposonPSI) |
| scaffold9673 |
67219 |
68307 |
- |
hAT |
hAT(TransposonPSI) |
| scaffold9673 |
67313 |
67519 |
- |
hAT-16_ZM |
DNA/hAT-Ac |
| scaffold9673 |
68294 |
69205 |
- |
hAT |
hAT(TransposonPSI) |
| scaffold9673 |
68442 |
68634 |
- |
ATHAT10 |
DNA/hAT-Ac |
| scaffold9673 |
69676 |
69726 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
69795 |
69830 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
70012 |
70056 |
+ |
G-rich |
Low_complexity |
| scaffold9673 |
70412 |
70636 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold9673 |
74981 |
75038 |
- |
STOWAWAY2_SB |
DNA/TcMar-Stowaway |
| scaffold9673 |
76945 |
76971 |
+ |
(A)n |
Simple_repeat |
| scaffold9673 |
77272 |
77318 |
+ |
(CCACCA)n |
Simple_repeat |
| scaffold9673 |
77798 |
77826 |
+ |
(ACC)n |
Simple_repeat |
| scaffold9673 |
78043 |
78102 |
+ |
(GACCTC)n |
Simple_repeat |
| scaffold9673 |
78468 |
78789 |
+ |
RS748 |
Unspecified |
| scaffold9673 |
79922 |
79967 |
+ |
(CTC)n |
Simple_repeat |
| scaffold9673 |
80100 |
80155 |
+ |
GA-rich |
Low_complexity |
| scaffold9673 |
80877 |
81133 |
- |
PL810 |
Unspecified |
| scaffold9673 |
81127 |
81483 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9673 |
81136 |
81476 |
+ |
COP_I_MT-int |
LTR/Copia |
| scaffold9673 |
82193 |
82236 |
+ |
(CAT)n |
Simple_repeat |
| scaffold9673 |
82238 |
83246 |
- |
RS1447 |
Unspecified |
| scaffold9673 |
83230 |
86152 |
+ |
COP_I_MT-int |
LTR/Copia |
| scaffold9673 |
86394 |
86432 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
87551 |
87611 |
+ |
(TTTAATA)n |
Simple_repeat |
| scaffold9673 |
88108 |
88148 |
+ |
(TAGTT)n |
Simple_repeat |
| scaffold9673 |
88194 |
88336 |
+ |
RS976 |
Unspecified |
| scaffold9673 |
88560 |
88608 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
88662 |
88715 |
+ |
(TTTGAT)n |
Simple_repeat |
| scaffold9673 |
88864 |
89952 |
+ |
RS6804 |
Unspecified |
| scaffold9673 |
90090 |
90348 |
- |
RS2078 |
Unspecified |
| scaffold9673 |
90525 |
90740 |
- |
RS2078 |
Unspecified |
| scaffold9673 |
90847 |
90999 |
+ |
RS15351 |
Unspecified |
| scaffold9673 |
91362 |
91470 |
+ |
RS14907 |
Unspecified |
| scaffold9673 |
91994 |
92248 |
- |
RS1 |
Unspecified |
| scaffold9673 |
92278 |
92294 |
+ |
(A)n |
Simple_repeat |
| scaffold9673 |
92583 |
92768 |
- |
RS5 |
Unspecified |
| scaffold9673 |
94079 |
94119 |
+ |
(ATT)n |
Simple_repeat |
| scaffold9673 |
94811 |
94842 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold9673 |
95527 |
95551 |
+ |
(A)n |
Simple_repeat |
| scaffold9673 |
96211 |
96339 |
- |
RS549 |
Unspecified |
| scaffold9673 |
97975 |
98003 |
+ |
A-rich |
Low_complexity |
| scaffold9673 |
100605 |
100662 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
100689 |
100759 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9673 |
103850 |
104050 |
- |
RS94 |
Unspecified |
| scaffold9673 |
104329 |
104356 |
+ |
(A)n |
Simple_repeat |
| scaffold9673 |
104394 |
104630 |
- |
RS7068 |
Unspecified |
| scaffold9673 |
104831 |
104914 |
+ |
(ATATACT)n |
Simple_repeat |
| scaffold9673 |
105803 |
105989 |
+ |
RS68 |
Unspecified |
| scaffold9673 |
106716 |
106736 |
+ |
(CTC)n |
Simple_repeat |
| scaffold9673 |
108368 |
108454 |
+ |
(CAA)n |
Simple_repeat |
| scaffold9673 |
108667 |
110294 |
- |
RS265 |
Unspecified |
| scaffold9673 |
110389 |
110422 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold9673 |
110697 |
110793 |
- |
Copia-4_SL-I |
LTR/Copia |
| scaffold9673 |
110888 |
111445 |
- |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold9673 |
111900 |
111922 |
+ |
(CCT)n |
Simple_repeat |
| scaffold9673 |
112026 |
112050 |
+ |
(TCT)n |
Simple_repeat |
| scaffold9673 |
112806 |
112869 |
+ |
(TTA)n |
Simple_repeat |
| scaffold9673 |
112982 |
113494 |
- |
PL777 |
Unspecified |
| scaffold9673 |
113808 |
113849 |
- |
RS6631 |
Unspecified |
| scaffold9673 |
113973 |
115002 |
- |
RS6631 |
Unspecified |
| scaffold9673 |
115168 |
115251 |
+ |
(TAA)n |
Simple_repeat |
| scaffold9673 |
116684 |
116705 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold9673 |
116706 |
116723 |
+ |
(TATTTTT)n |
Simple_repeat |
| scaffold9673 |
116911 |
117048 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold9673 |
119087 |
119120 |
+ |
A-rich |
Low_complexity |