scaffold9692 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold9692 |
4 |
888 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold9692 |
4 |
996 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold9692 |
816 |
996 |
- |
RS4087 |
Unspecified |
| scaffold9692 |
2348 |
2380 |
+ |
GA-rich |
Low_complexity |
| scaffold9692 |
2379 |
3566 |
+ |
PL475 |
Unspecified |
| scaffold9692 |
3681 |
3702 |
+ |
(CATT)n |
Simple_repeat |
| scaffold9692 |
3995 |
4039 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
4571 |
4679 |
+ |
RS446 |
Unspecified |
| scaffold9692 |
4603 |
4721 |
- |
RS425 |
Unspecified |
| scaffold9692 |
4673 |
4843 |
+ |
RS76 |
Unspecified |
| scaffold9692 |
5093 |
5144 |
+ |
(TCATT)n |
Simple_repeat |
| scaffold9692 |
5530 |
5616 |
+ |
PL464 |
Unspecified |
| scaffold9692 |
5602 |
5811 |
- |
RS504 |
Unspecified |
| scaffold9692 |
5970 |
6049 |
+ |
(TTATTTG)n |
Simple_repeat |
| scaffold9692 |
6259 |
6285 |
+ |
(TCA)n |
Simple_repeat |
| scaffold9692 |
6286 |
6305 |
+ |
(TTATCA)n |
Simple_repeat |
| scaffold9692 |
6680 |
6827 |
+ |
Copia-28_ST-I |
LTR/Copia |
| scaffold9692 |
7055 |
7127 |
+ |
Copia-28_ST-I |
LTR/Copia |
| scaffold9692 |
7182 |
7273 |
+ |
Copia-28_ST-I |
LTR/Copia |
| scaffold9692 |
7902 |
7949 |
+ |
Copia-28_ST-I |
LTR/Copia |
| scaffold9692 |
8361 |
9239 |
+ |
Copia-28_ST-I |
LTR/Copia |
| scaffold9692 |
9620 |
11229 |
+ |
Copia-96_GM-I |
LTR/Copia |
| scaffold9692 |
11407 |
11465 |
+ |
(TCA)n |
Simple_repeat |
| scaffold9692 |
11596 |
11631 |
+ |
(GTTT)n |
Simple_repeat |
| scaffold9692 |
11898 |
12346 |
+ |
RS9711 |
Unspecified |
| scaffold9692 |
13252 |
13287 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
13655 |
13733 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold9692 |
14440 |
14467 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
17802 |
17848 |
+ |
(CCA)n |
Simple_repeat |
| scaffold9692 |
19850 |
19878 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold9692 |
20052 |
20165 |
+ |
RS285 |
Unspecified |
| scaffold9692 |
20354 |
20382 |
+ |
(ATT)n |
Simple_repeat |
| scaffold9692 |
20686 |
20781 |
+ |
(TGGATC)n |
Simple_repeat |
| scaffold9692 |
21106 |
21151 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
22077 |
22164 |
+ |
RS376 |
Unspecified |
| scaffold9692 |
22722 |
22784 |
+ |
(ACAACG)n |
Simple_repeat |
| scaffold9692 |
22932 |
23072 |
- |
RS1317 |
Unspecified |
| scaffold9692 |
23563 |
23653 |
+ |
RS376 |
Unspecified |
| scaffold9692 |
24465 |
24520 |
+ |
(TTGTATA)n |
Simple_repeat |
| scaffold9692 |
24988 |
25074 |
+ |
G-rich |
Low_complexity |
| scaffold9692 |
25228 |
25252 |
+ |
(ATA)n |
Simple_repeat |
| scaffold9692 |
25348 |
25491 |
- |
hAT |
hAT(TransposonPSI) |
| scaffold9692 |
26924 |
26962 |
+ |
(AGCACG)n |
Simple_repeat |
| scaffold9692 |
27407 |
27505 |
- |
RS353 |
Unspecified |
| scaffold9692 |
28670 |
28854 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold9692 |
28917 |
29081 |
- |
PL909 |
Unspecified |
| scaffold9692 |
29084 |
29702 |
- |
RS934 |
Unspecified |
| scaffold9692 |
30982 |
31821 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold9692 |
31250 |
31392 |
- |
RS1210 |
Unspecified |
| scaffold9692 |
31433 |
32422 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold9692 |
32434 |
32455 |
+ |
(A)n |
Simple_repeat |
| scaffold9692 |
32525 |
32580 |
+ |
G-rich |
Low_complexity |
| scaffold9692 |
32688 |
32716 |
+ |
(CGGGC)n |
Simple_repeat |
| scaffold9692 |
32747 |
32832 |
+ |
(TTCATCC)n |
Simple_repeat |
| scaffold9692 |
32862 |
32966 |
+ |
(ACA)n |
Simple_repeat |
| scaffold9692 |
33117 |
33179 |
+ |
(TCTCC)n |
Simple_repeat |
| scaffold9692 |
33596 |
33707 |
- |
RS3706 |
Unspecified |
| scaffold9692 |
33757 |
33931 |
- |
RS38 |
Unspecified |
| scaffold9692 |
34876 |
34936 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold9692 |
36932 |
36951 |
+ |
(A)n |
Simple_repeat |
| scaffold9692 |
37185 |
37211 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
40873 |
40913 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
41793 |
41822 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
43943 |
44323 |
- |
PL436 |
Unspecified |
| scaffold9692 |
48568 |
48704 |
+ |
PL306 |
Unspecified |
| scaffold9692 |
49737 |
49779 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
52225 |
52374 |
+ |
RS6556 |
Unspecified |
| scaffold9692 |
52971 |
53142 |
+ |
RS79 |
Unspecified |
| scaffold9692 |
53428 |
53456 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold9692 |
53680 |
53755 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold9692 |
53782 |
53835 |
+ |
G-rich |
Low_complexity |
| scaffold9692 |
54089 |
54112 |
+ |
(ACC)n |
Simple_repeat |
| scaffold9692 |
54168 |
54581 |
- |
RS6312 |
Unspecified |
| scaffold9692 |
54598 |
54691 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold9692 |
54716 |
54899 |
+ |
RS1990 |
Unspecified |
| scaffold9692 |
54932 |
54998 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold9692 |
54970 |
55007 |
+ |
(AAT)n |
Simple_repeat |
| scaffold9692 |
56744 |
56787 |
+ |
(GTG)n |
Simple_repeat |
| scaffold9692 |
57138 |
57582 |
- |
PL2 |
Unspecified |
| scaffold9692 |
57550 |
57594 |
- |
PL271 |
Unspecified |
| scaffold9692 |
57550 |
57603 |
+ |
PL6 |
Unspecified |
| scaffold9692 |
57635 |
58489 |
- |
RS123 |
Unspecified |
| scaffold9692 |
58560 |
58659 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold9692 |
58714 |
58797 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold9692 |
58984 |
58991 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold9692 |
58992 |
59026 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
59419 |
59449 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
60181 |
61111 |
- |
PL771 |
Unspecified |
| scaffold9692 |
61272 |
61344 |
+ |
(ATA)n |
Simple_repeat |
| scaffold9692 |
61343 |
61447 |
+ |
RS17927 |
Unspecified |
| scaffold9692 |
61874 |
61906 |
+ |
(ACTCAA)n |
Simple_repeat |
| scaffold9692 |
63208 |
63281 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
66711 |
67023 |
- |
RS726 |
Unspecified |
| scaffold9692 |
67114 |
67178 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold9692 |
67203 |
67306 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold9692 |
67364 |
67463 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold9692 |
71614 |
71765 |
- |
RS1568 |
Unspecified |
| scaffold9692 |
71767 |
71948 |
- |
RS4 |
Unspecified |
| scaffold9692 |
71961 |
72319 |
- |
RS614 |
Unspecified |
| scaffold9692 |
72603 |
72748 |
+ |
RS13232 |
Unspecified |
| scaffold9692 |
72619 |
72766 |
+ |
RS3187 |
Unspecified |
| scaffold9692 |
72875 |
72982 |
+ |
RS3181 |
Unspecified |
| scaffold9692 |
73388 |
73408 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
73609 |
73648 |
+ |
(GGT)n |
Simple_repeat |
| scaffold9692 |
73984 |
74373 |
+ |
PL270 |
Unspecified |
| scaffold9692 |
74680 |
74717 |
+ |
(A)n |
Simple_repeat |
| scaffold9692 |
76771 |
76898 |
+ |
RS250 |
Unspecified |
| scaffold9692 |
77004 |
77036 |
+ |
(TTTTTTA)n |
Simple_repeat |
| scaffold9692 |
77968 |
78005 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold9692 |
82471 |
82547 |
+ |
RS16206 |
Unspecified |
| scaffold9692 |
82550 |
82602 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold9692 |
82829 |
83072 |
- |
RS4 |
Unspecified |
| scaffold9692 |
83088 |
83158 |
+ |
(ATTTGAA)n |
Simple_repeat |
| scaffold9692 |
83360 |
83382 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
83714 |
84017 |
+ |
RS614 |
Unspecified |
| scaffold9692 |
84380 |
84424 |
+ |
GA-rich |
Low_complexity |
| scaffold9692 |
84445 |
84476 |
+ |
(TTTTCT)n |
Simple_repeat |
| scaffold9692 |
84860 |
84882 |
+ |
(GTG)n |
Simple_repeat |
| scaffold9692 |
88344 |
88609 |
+ |
RS106 |
Unspecified |
| scaffold9692 |
88669 |
88707 |
+ |
(TTTCATA)n |
Simple_repeat |
| scaffold9692 |
90489 |
90529 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold9692 |
93406 |
93447 |
+ |
(ATG)n |
Simple_repeat |
| scaffold9692 |
94111 |
94152 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold9692 |
94676 |
94692 |
+ |
(AT)n |
Simple_repeat |
| scaffold9692 |
94876 |
95174 |
- |
RS5757 |
Unspecified |
| scaffold9692 |
95910 |
96064 |
+ |
RS1969 |
Unspecified |
| scaffold9692 |
96088 |
96113 |
+ |
(TA)n |
Simple_repeat |
| scaffold9692 |
96114 |
96131 |
+ |
(GA)n |
Simple_repeat |
| scaffold9692 |
96246 |
96277 |
+ |
(A)n |
Simple_repeat |
| scaffold9692 |
97420 |
97505 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
97460 |
97505 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
97658 |
97820 |
+ |
RS11398 |
Unspecified |
| scaffold9692 |
97896 |
98065 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
98607 |
98651 |
+ |
GA-rich |
Low_complexity |
| scaffold9692 |
98867 |
98900 |
+ |
(TA)n |
Simple_repeat |
| scaffold9692 |
100382 |
101212 |
- |
Copia-40_ST-I |
LTR/Copia |
| scaffold9692 |
101571 |
102494 |
- |
Copia-40_ST-I |
LTR/Copia |
| scaffold9692 |
102571 |
102902 |
- |
Copia-40_ST-I |
LTR/Copia |
| scaffold9692 |
103283 |
103911 |
- |
Copia-40_ST-I |
LTR/Copia |
| scaffold9692 |
104144 |
104178 |
+ |
(AATTTG)n |
Simple_repeat |
| scaffold9692 |
104162 |
104301 |
+ |
(TGAAGA)n |
Simple_repeat |
| scaffold9692 |
104688 |
105853 |
- |
Copia-1_ST-I |
LTR/Copia |
| scaffold9692 |
106078 |
107152 |
- |
RS2140 |
Unspecified |
| scaffold9692 |
107362 |
107405 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold9692 |
107710 |
107747 |
+ |
(CCCCACC)n |
Simple_repeat |
| scaffold9692 |
108031 |
108256 |
+ |
RS60 |
Unspecified |
| scaffold9692 |
108494 |
108611 |
- |
RS16836 |
Unspecified |
| scaffold9692 |
108508 |
108609 |
- |
RS16382 |
Unspecified |
| scaffold9692 |
110067 |
110107 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
110441 |
110480 |
+ |
(A)n |
Simple_repeat |
| scaffold9692 |
111121 |
111229 |
+ |
RS15405 |
Unspecified |
| scaffold9692 |
111420 |
111547 |
+ |
RS17949 |
Unspecified |
| scaffold9692 |
112580 |
112600 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
114605 |
114946 |
+ |
RS12133 |
Unspecified |
| scaffold9692 |
114902 |
115250 |
+ |
RS5479 |
Unspecified |
| scaffold9692 |
115050 |
115425 |
+ |
RS3487 |
Unspecified |
| scaffold9692 |
115587 |
115610 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
115736 |
115768 |
+ |
GA-rich |
Low_complexity |
| scaffold9692 |
115822 |
115839 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
116948 |
116976 |
+ |
(ATT)n |
Simple_repeat |
| scaffold9692 |
119675 |
119773 |
+ |
(TAA)n |
Simple_repeat |
| scaffold9692 |
120762 |
121029 |
+ |
PL727 |
Unspecified |
| scaffold9692 |
120763 |
120973 |
+ |
RS735 |
Unspecified |
| scaffold9692 |
122393 |
122657 |
+ |
RS356 |
Unspecified |
| scaffold9692 |
123814 |
123862 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
124057 |
124076 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
126855 |
126942 |
+ |
(GCC)n |
Simple_repeat |
| scaffold9692 |
126963 |
127052 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
127235 |
127281 |
- |
PL375 |
Unspecified |
| scaffold9692 |
127738 |
127879 |
+ |
(ATT)n |
Simple_repeat |
| scaffold9692 |
128477 |
128511 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold9692 |
128821 |
128868 |
+ |
(TTAGTT)n |
Simple_repeat |
| scaffold9692 |
129189 |
129474 |
- |
RS1 |
Unspecified |
| scaffold9692 |
129749 |
129829 |
+ |
(A)n |
Simple_repeat |
| scaffold9692 |
130822 |
130847 |
+ |
(AAT)n |
Simple_repeat |
| scaffold9692 |
131048 |
131105 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold9692 |
131772 |
132715 |
- |
Copia-43_Mad-I |
LTR/Copia |
| scaffold9692 |
132936 |
132973 |
+ |
GA-rich |
Low_complexity |
| scaffold9692 |
133069 |
133277 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9692 |
133278 |
133492 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9692 |
133493 |
133563 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9692 |
133564 |
133606 |
+ |
RS1909 |
Unspecified |
| scaffold9692 |
133935 |
133967 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold9692 |
133977 |
133996 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
134155 |
134194 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold9692 |
134931 |
134953 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
140926 |
140951 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold9692 |
144246 |
144317 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold9692 |
144832 |
144849 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
145429 |
145483 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
146671 |
146711 |
+ |
(CCTTGCG)n |
Simple_repeat |
| scaffold9692 |
146765 |
147610 |
+ |
PL875 |
Unspecified |
| scaffold9692 |
146862 |
147587 |
+ |
RS1560 |
Unspecified |
| scaffold9692 |
147670 |
147692 |
+ |
(AG)n |
Simple_repeat |
| scaffold9692 |
148052 |
148377 |
+ |
RS7487 |
Unspecified |
| scaffold9692 |
148382 |
148403 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
148985 |
149014 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
149422 |
149448 |
+ |
(GATG)n |
Simple_repeat |
| scaffold9692 |
149449 |
149508 |
+ |
(ATCC)n |
Simple_repeat |
| scaffold9692 |
150220 |
150254 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
150426 |
150498 |
+ |
A-rich |
Low_complexity |
| scaffold9692 |
151075 |
151092 |
+ |
(A)n |
Simple_repeat |
| scaffold9692 |
151114 |
151328 |
- |
RS4164 |
Unspecified |
| scaffold9692 |
151352 |
151368 |
+ |
(T)n |
Simple_repeat |
| scaffold9692 |
151560 |
151756 |
+ |
PL859 |
Unspecified |
| scaffold9692 |
151655 |
151775 |
+ |
RS3355 |
Unspecified |
| scaffold9692 |
152071 |
152401 |
+ |
RS2474 |
Unspecified |
| scaffold9692 |
152071 |
152344 |
+ |
RS2474 |
Unspecified |
| scaffold9692 |
152470 |
152898 |
- |
RS140 |
Unspecified |
| scaffold9692 |
152978 |
153318 |
- |
PL400 |
Unspecified |
| scaffold9692 |
154479 |
154643 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold9692 |
154658 |
154981 |
+ |
PL787 |
Unspecified |
| scaffold9692 |
155079 |
155578 |
- |
RS3357 |
Unspecified |
| scaffold9692 |
156179 |
156218 |
+ |
(TGTTAT)n |
Simple_repeat |
| scaffold9692 |
159198 |
159442 |
+ |
RS2 |
Unspecified |
| scaffold9692 |
160269 |
161008 |
+ |
RS1154 |
Unspecified |
| scaffold9692 |
160584 |
161174 |
- |
PL936 |
Unspecified |
| scaffold9692 |
160743 |
161225 |
+ |
PL243 |
Unspecified |
| scaffold9692 |
161256 |
161673 |
- |
PL143 |
Unspecified |
| scaffold9692 |
161984 |
162519 |
+ |
RS11258 |
Unspecified |
| scaffold9692 |
162081 |
162882 |
+ |
PL238 |
Unspecified |
| scaffold9692 |
162881 |
163187 |
+ |
RS434 |
Unspecified |
| scaffold9692 |
163218 |
164313 |
- |
Gypsy-70-I_ZM |
LTR/Gypsy |
| scaffold9692 |
164558 |
165891 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold9692 |
166077 |
166186 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold9692 |
166303 |
166386 |
- |
RIRE3_I-int |
LTR/Gypsy |
| scaffold9692 |
166607 |
167176 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold9692 |
166837 |
166874 |
+ |
(CCTTCT)n |
Simple_repeat |
| scaffold9692 |
167687 |
168227 |
+ |
PL423 |
Unspecified |
| scaffold9692 |
167760 |
168352 |
+ |
RS30 |
Unspecified |