scaffold9745 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold9745 |
1 |
193 |
- |
PL867 |
Unspecified |
| scaffold9745 |
204 |
440 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9745 |
508 |
550 |
- |
Copia-36_BD-I |
LTR/Copia |
| scaffold9745 |
628 |
656 |
+ |
A-rich |
Low_complexity |
| scaffold9745 |
1720 |
2072 |
- |
RS804 |
Unspecified |
| scaffold9745 |
1769 |
2176 |
+ |
RS2402 |
Unspecified |
| scaffold9745 |
1848 |
2307 |
+ |
RS2443 |
Unspecified |
| scaffold9745 |
1976 |
2372 |
+ |
RS7308 |
Unspecified |
| scaffold9745 |
2312 |
2540 |
+ |
RS13355 |
Unspecified |
| scaffold9745 |
2671 |
2757 |
+ |
(T)n |
Simple_repeat |
| scaffold9745 |
3275 |
4793 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold9745 |
5273 |
5689 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold9745 |
5701 |
6069 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold9745 |
6201 |
6594 |
- |
Copia-90_ST-I |
LTR/Copia |
| scaffold9745 |
7492 |
8106 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9745 |
7851 |
7874 |
+ |
(CAT)n |
Simple_repeat |
| scaffold9745 |
7939 |
8088 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9745 |
8100 |
8735 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9745 |
8271 |
8576 |
- |
Copia-90_ST-I |
LTR/Copia |
| scaffold9745 |
9198 |
9239 |
+ |
A-rich |
Low_complexity |
| scaffold9745 |
10563 |
10596 |
+ |
(TGG)n |
Simple_repeat |
| scaffold9745 |
10678 |
10728 |
+ |
(TGT)n |
Simple_repeat |
| scaffold9745 |
10729 |
10810 |
+ |
(GTT)n |
Simple_repeat |
| scaffold9745 |
10811 |
10820 |
+ |
(TGT)n |
Simple_repeat |
| scaffold9745 |
11415 |
11483 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold9745 |
11508 |
13386 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9745 |
11710 |
13386 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9745 |
11798 |
13364 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold9745 |
13385 |
14263 |
+ |
PL532 |
Unspecified |
| scaffold9745 |
14336 |
14380 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold9745 |
14397 |
14431 |
+ |
A-rich |
Low_complexity |
| scaffold9745 |
14689 |
14746 |
+ |
A-rich |
Low_complexity |
| scaffold9745 |
15170 |
15231 |
+ |
(ATA)n |
Simple_repeat |
| scaffold9745 |
15619 |
15666 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold9745 |
15873 |
15892 |
+ |
(A)n |
Simple_repeat |
| scaffold9745 |
15949 |
15974 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold9745 |
15975 |
16026 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold9745 |
16027 |
16033 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold9745 |
17995 |
18017 |
+ |
(C)n |
Simple_repeat |
| scaffold9745 |
18270 |
18492 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold9745 |
18519 |
18572 |
- |
RS369 |
Unspecified |
| scaffold9745 |
19818 |
19866 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold9745 |
20324 |
20620 |
+ |
RS13771 |
Unspecified |
| scaffold9745 |
21314 |
22927 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold9745 |
23373 |
23692 |
+ |
RS4061 |
Unspecified |
| scaffold9745 |
24286 |
24293 |
+ |
(TTTTCG)n |
Simple_repeat |
| scaffold9745 |
24294 |
24332 |
+ |
(TCGTGTT)n |
Simple_repeat |
| scaffold9745 |
24333 |
24341 |
+ |
(TTTTCG)n |
Simple_repeat |
| scaffold9745 |
24723 |
24757 |
+ |
(AATCAA)n |
Simple_repeat |
| scaffold9745 |
24758 |
24817 |
+ |
(AATCAAG)n |
Simple_repeat |
| scaffold9745 |
25031 |
25587 |
- |
PL503 |
Unspecified |
| scaffold9745 |
26749 |
27838 |
+ |
RS2012 |
Unspecified |
| scaffold9745 |
28721 |
28766 |
+ |
(CATAT)n |
Simple_repeat |
| scaffold9745 |
28820 |
28952 |
- |
RS1415 |
Unspecified |
| scaffold9745 |
29087 |
29731 |
- |
Copia-35_ST-I |
LTR/Copia |
| scaffold9745 |
29950 |
32159 |
- |
Copia-35_ST-I |
LTR/Copia |
| scaffold9745 |
33188 |
33456 |
- |
RS1 |
Unspecified |
| scaffold9745 |
33479 |
33528 |
+ |
(ACTTTT)n |
Simple_repeat |
| scaffold9745 |
34247 |
34371 |
+ |
RS17932 |
Unspecified |
| scaffold9745 |
34425 |
34605 |
- |
RS5 |
Unspecified |
| scaffold9745 |
34799 |
35164 |
+ |
RS6506 |
Unspecified |
| scaffold9745 |
36391 |
36425 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold9745 |
36539 |
36627 |
+ |
(TTA)n |
Simple_repeat |
| scaffold9745 |
36970 |
37284 |
- |
RS726 |
Unspecified |
| scaffold9745 |
37592 |
37608 |
+ |
(T)n |
Simple_repeat |
| scaffold9745 |
37719 |
37844 |
+ |
RS8095 |
Unspecified |
| scaffold9745 |
38510 |
38729 |
+ |
Copia-86_ST-I |
LTR/Copia |
| scaffold9745 |
38786 |
39118 |
+ |
Copia16-VV_I-int |
LTR/Copia |
| scaffold9745 |
39243 |
42435 |
+ |
Copia16-VV_I-int |
LTR/Copia |
| scaffold9745 |
43417 |
43453 |
+ |
(AAAATAA)n |
Simple_repeat |
| scaffold9745 |
43590 |
43660 |
+ |
Copia16-VV_I-int |
LTR/Copia |
| scaffold9745 |
43738 |
44021 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold9745 |
44471 |
44523 |
+ |
(ATT)n |
Simple_repeat |
| scaffold9745 |
44558 |
44824 |
- |
RS96 |
Unspecified |
| scaffold9745 |
45287 |
45337 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold9745 |
45362 |
45461 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold9745 |
47773 |
48212 |
+ |
RS932 |
Unspecified |
| scaffold9745 |
48841 |
48975 |
+ |
RS2719 |
Unspecified |
| scaffold9745 |
49972 |
50308 |
- |
RS42 |
Unspecified |
| scaffold9745 |
52165 |
52347 |
- |
RS11013 |
Unspecified |
| scaffold9745 |
52342 |
53956 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold9745 |
54204 |
55549 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold9745 |
55802 |
55964 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold9745 |
56253 |
56323 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold9745 |
56479 |
56733 |
- |
RS11013 |
Unspecified |
| scaffold9745 |
57596 |
57619 |
+ |
(T)n |
Simple_repeat |
| scaffold9745 |
57675 |
57834 |
+ |
RS4025 |
Unspecified |
| scaffold9745 |
57735 |
57892 |
+ |
RS3547 |
Unspecified |
| scaffold9745 |
58072 |
58116 |
+ |
(AAAATAA)n |
Simple_repeat |
| scaffold9745 |
58513 |
58646 |
- |
RS2170 |
Unspecified |
| scaffold9745 |
59727 |
59774 |
+ |
(TGA)n |
Simple_repeat |
| scaffold9745 |
59856 |
59899 |
+ |
(TAT)n |
Simple_repeat |
| scaffold9745 |
60785 |
61101 |
- |
RS5337 |
Unspecified |
| scaffold9745 |
60898 |
61204 |
+ |
RS3802 |
Unspecified |
| scaffold9745 |
60898 |
61157 |
- |
RS1982 |
Unspecified |
| scaffold9745 |
61111 |
61242 |
+ |
RS4244 |
Unspecified |
| scaffold9745 |
61385 |
61443 |
+ |
(CA)n |
Simple_repeat |
| scaffold9745 |
62185 |
62637 |
+ |
RS234 |
Unspecified |
| scaffold9745 |
62780 |
62828 |
+ |
(AACAATC)n |
Simple_repeat |
| scaffold9745 |
64308 |
64352 |
+ |
A-rich |
Low_complexity |
| scaffold9745 |
64621 |
64828 |
+ |
RS11675 |
Unspecified |
| scaffold9745 |
64907 |
64966 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold9745 |
64971 |
65017 |
+ |
(ACC)n |
Simple_repeat |
| scaffold9745 |
65090 |
65126 |
+ |
(TCC)n |
Simple_repeat |
| scaffold9745 |
65153 |
65192 |
+ |
(CCA)n |
Simple_repeat |
| scaffold9745 |
65200 |
65237 |
+ |
(ACG)n |
Simple_repeat |
| scaffold9745 |
65238 |
65259 |
+ |
(TAC)n |
Simple_repeat |
| scaffold9745 |
65264 |
65472 |
- |
RS22 |
Unspecified |
| scaffold9745 |
65531 |
65606 |
+ |
(ATGTATG)n |
Simple_repeat |
| scaffold9745 |
65757 |
66063 |
+ |
(TAAGAA)n |
Simple_repeat |
| scaffold9745 |
66281 |
66890 |
- |
Gypsy1-PTR_I-int |
LTR/Gypsy |