scaffold9949 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold9949 |
106 |
240 |
+ |
RS1272 |
Unspecified |
| scaffold9949 |
240 |
462 |
- |
RS1638 |
Unspecified |
| scaffold9949 |
468 |
646 |
- |
RS729 |
Unspecified |
| scaffold9949 |
704 |
723 |
+ |
(T)n |
Simple_repeat |
| scaffold9949 |
740 |
854 |
- |
RS729 |
Unspecified |
| scaffold9949 |
1126 |
1166 |
- |
RS729 |
Unspecified |
| scaffold9949 |
1193 |
1336 |
- |
RS115 |
Unspecified |
| scaffold9949 |
2242 |
3741 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold9949 |
2732 |
2869 |
+ |
Copia-44_ST-I |
LTR/Copia |
| scaffold9949 |
3353 |
3578 |
+ |
Copia-44_ST-I |
LTR/Copia |
| scaffold9949 |
3831 |
4701 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold9949 |
5054 |
6667 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold9949 |
7683 |
7709 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold9949 |
7870 |
7890 |
+ |
(T)n |
Simple_repeat |
| scaffold9949 |
8043 |
8068 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold9949 |
8529 |
8561 |
+ |
(T)n |
Simple_repeat |
| scaffold9949 |
8663 |
8701 |
+ |
(TTTTGAA)n |
Simple_repeat |
| scaffold9949 |
12596 |
12841 |
+ |
RS17600 |
Unspecified |
| scaffold9949 |
13392 |
13509 |
+ |
RS14975 |
Unspecified |
| scaffold9949 |
13568 |
13656 |
+ |
(TTTTTCA)n |
Simple_repeat |
| scaffold9949 |
14363 |
14597 |
+ |
RS17152 |
Unspecified |
| scaffold9949 |
14848 |
14987 |
+ |
RS18107 |
Unspecified |
| scaffold9949 |
15017 |
15035 |
+ |
(A)n |
Simple_repeat |
| scaffold9949 |
15305 |
15418 |
+ |
RS16197 |
Unspecified |
| scaffold9949 |
17580 |
17683 |
+ |
RS17031 |
Unspecified |
| scaffold9949 |
18355 |
18555 |
+ |
RS17250 |
Unspecified |
| scaffold9949 |
18896 |
19048 |
+ |
RS17475 |
Unspecified |
| scaffold9949 |
19441 |
19466 |
+ |
(ATG)n |
Simple_repeat |
| scaffold9949 |
19800 |
20064 |
- |
RS356 |
Unspecified |
| scaffold9949 |
20264 |
20302 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold9949 |
21002 |
21055 |
+ |
(AT)n |
Simple_repeat |
| scaffold9949 |
21545 |
21809 |
+ |
RS356 |
Unspecified |
| scaffold9949 |
22504 |
22878 |
+ |
RS8 |
Unspecified |
| scaffold9949 |
23451 |
24049 |
- |
PL216 |
Unspecified |
| scaffold9949 |
24356 |
24375 |
+ |
(A)n |
Simple_repeat |
| scaffold9949 |
24672 |
24718 |
+ |
A-rich |
Low_complexity |
| scaffold9949 |
25022 |
25068 |
+ |
(TCGGA)n |
Simple_repeat |
| scaffold9949 |
26591 |
26682 |
- |
PL904 |
Unspecified |
| scaffold9949 |
26598 |
26697 |
- |
RS398 |
Unspecified |
| scaffold9949 |
27280 |
27414 |
- |
RS4156 |
Unspecified |
| scaffold9949 |
27408 |
28206 |
- |
RS488 |
Unspecified |
| scaffold9949 |
27915 |
28359 |
- |
RS1545 |
Unspecified |
| scaffold9949 |
28181 |
28402 |
- |
RS9613 |
Unspecified |
| scaffold9949 |
28994 |
29020 |
+ |
(ATA)n |
Simple_repeat |
| scaffold9949 |
30630 |
30772 |
+ |
RS16741 |
Unspecified |
| scaffold9949 |
35397 |
35579 |
- |
RS18243 |
Unspecified |
| scaffold9949 |
35769 |
35821 |
+ |
(CATTAAT)n |
Simple_repeat |
| scaffold9949 |
35999 |
36029 |
+ |
(TG)n |
Simple_repeat |
| scaffold9949 |
36688 |
37059 |
- |
RS539 |
Unspecified |
| scaffold9949 |
37158 |
37221 |
+ |
(ATA)n |
Simple_repeat |
| scaffold9949 |
37239 |
37265 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold9949 |
37851 |
38073 |
- |
RS17600 |
Unspecified |
| scaffold9949 |
38168 |
38192 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold9949 |
38207 |
38251 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold9949 |
38710 |
38753 |
+ |
A-rich |
Low_complexity |
| scaffold9949 |
39077 |
39110 |
+ |
(ACA)n |
Simple_repeat |
| scaffold9949 |
40339 |
40368 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold9949 |
42412 |
42455 |
+ |
(AAGAA)n |
Simple_repeat |
| scaffold9949 |
42855 |
43337 |
+ |
RS1275 |
Unspecified |
| scaffold9949 |
43814 |
43841 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold9949 |
44121 |
44142 |
+ |
(AG)n |
Simple_repeat |
| scaffold9949 |
45339 |
45394 |
+ |
A-rich |
Low_complexity |
| scaffold9949 |
45581 |
45830 |
+ |
RS2524 |
Unspecified |
| scaffold9949 |
46196 |
46229 |
+ |
(TTCAAT)n |
Simple_repeat |
| scaffold9949 |
46783 |
46819 |
+ |
(TTTAG)n |
Simple_repeat |
| scaffold9949 |
47335 |
47487 |
+ |
PL347 |
Unspecified |
| scaffold9949 |
47488 |
47850 |
+ |
RS367 |
Unspecified |
| scaffold9949 |
48681 |
48873 |
- |
PL517 |
Unspecified |
| scaffold9949 |
48876 |
49023 |
+ |
(AAT)n |
Simple_repeat |
| scaffold9949 |
50089 |
53145 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold9949 |
50563 |
50618 |
+ |
(AAC)n |
Simple_repeat |
| scaffold9949 |
51781 |
53117 |
+ |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold9949 |
53181 |
53332 |
+ |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold9949 |
53788 |
54549 |
+ |
ltr_Roo |
ltr_Roo(TransposonPSI) |
| scaffold9949 |
53806 |
54479 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |