Blast Search
Database:
nucleotide databases
Genome Assembly sequences
Repeat sequences
ORF sequences
ORF sequences (without transposons)

protein databases
translated ORF sequences
translated ORF sequences (without transposons)
Query sequence: (FASTA format recommended)
Search program:
Database Query sequence Description
nucleotide protein nucleotide protein
BLASTN o x o x Aligning your nucleotide sequence with nucleotide sequence database.
BLASTP x o x o Aligning your amino acid sequence with amino acid sequence database.
BLASTX x o o x Aligning your nucleotide sequence with amino acid sequence database by translating your sequence taking into account all six possible open reading frames.
TBLASTN o x x o Aligning your amino acid sequence with nucleotide sequence database by translating database sequences taking into account all six possible open reading frames.
TBLASTX o x o x Aligning your nucleotide sequence with nucleotide sequence database by translating both sequences taking into account all six possible open reading frames.

Advanced settings
for which one-line descriptions will be reported:
for which alignments will be reported:

Expectation value

Filter query sequence (DUST with blastn, SEG with tblastn)
Perform gapped alignment