Carnation DB

Dca12012.1

Annotation

6-exons
f-1
sp|D7LHR4_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_482466#GO:0009055;GO:0015035;GO:0045454;GO:0006662#2F2P0C
AT2G35010.1 | Symbols: ATO1, TO1 | thioredoxin O1 | chr2:14754398-14755888 FORWARD LENGTH=194
Repeat List (scaffold15429)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12012.1	17	195	195	44.1	179	46	1e-33
Target_name	Start	End	Length	Cov(%)
sp\|D7LHR4_ARALL	9	194	194	95.87

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca12012.1	1	195	195	41.02	195	42	2e-33
Target_name	Start	End	Length	Cov(%)
AT2G35010.1	1	194	194	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold15429	Augus-PASA	mRNA	400	4355	.	+	.	ID=Dca12012.1;Parent=Dca12012
scaffold15429	Augus-PASA	exon	400	643	.	+	.	ID=Dca12012.1.exon1;Parent=Dca12012.1
scaffold15429	Augus-PASA	exon	1424	1492	.	+	.	ID=Dca12012.1.exon2;Parent=Dca12012.1
scaffold15429	Augus-PASA	exon	1584	1634	.	+	.	ID=Dca12012.1.exon3;Parent=Dca12012.1
scaffold15429	Augus-PASA	exon	1976	2055	.	+	.	ID=Dca12012.1.exon4;Parent=Dca12012.1
scaffold15429	Augus-PASA	exon	3943	3987	.	+	.	ID=Dca12012.1.exon5;Parent=Dca12012.1
scaffold15429	Augustus	exon	4257	4355	.	+	.	ID=Dca12012.1.exon6;Parent=Dca12012.1