Dca30980.1
Annotation
- 3-exons
- f-1
- sp|Q9ZUF0_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g05980#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold3108)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30980.1 |
55 |
396 |
414 |
28.01 |
342 |
30 |
1e-44
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9ZUF0_ARATH |
405 |
780 |
1352 |
27.81 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30980.1 |
132 |
378 |
414 |
21.25 |
247 |
32 |
4e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os06t0484800-00 |
229 |
510 |
857 |
32.9 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3108 |
Augustus |
mRNA |
11627 |
15387 |
. |
+ |
. |
ID=Dca30980.1;Parent=Dca30980 |
| scaffold3108 |
Augustus |
exon |
11627 |
11987 |
. |
+ |
. |
ID=Dca30980.1.exon1;Parent=Dca30980.1 |
| scaffold3108 |
Augustus |
exon |
12307 |
12647 |
. |
+ |
. |
ID=Dca30980.1.exon2;Parent=Dca30980.1 |
| scaffold3108 |
Augustus |
exon |
14845 |
15387 |
. |
+ |
. |
ID=Dca30980.1.exon3;Parent=Dca30980.1 |
