Carnation DB

Dca5250.1

Annotation

8-exons
f-1
sp|B9HSP5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_567278#GO:0033588;GO:0006357#0F1P1C
Os06t0639600-01 Similar to Elongator component.
Repeat List (scaffold12)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5250.1	1	284	330	59.69	284	69	1e-118
Target_name	Start	End	Length	Cov(%)
sp\|B9HSP5_POPTR	58	343	363	78.78

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5250.1	1	286	330	56.36	286	63	9e-109
Target_name	Start	End	Length	Cov(%)
Os06t0639600-01	64	359	378	78.3

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12	Augustus	mRNA	559379	562870	.	+	.	ID=Dca5250.1;Parent=Dca5250
scaffold12	Augustus	exon	559379	559567	.	+	.	ID=Dca5250.1.exon1;Parent=Dca5250.1
scaffold12	Augustus	exon	559664	559736	.	+	.	ID=Dca5250.1.exon2;Parent=Dca5250.1
scaffold12	Augustus	exon	561087	561240	.	+	.	ID=Dca5250.1.exon3;Parent=Dca5250.1
scaffold12	Augustus	exon	561399	561477	.	+	.	ID=Dca5250.1.exon4;Parent=Dca5250.1
scaffold12	Augustus	exon	561579	561738	.	+	.	ID=Dca5250.1.exon5;Parent=Dca5250.1
scaffold12	Augustus	exon	561826	561917	.	+	.	ID=Dca5250.1.exon6;Parent=Dca5250.1
scaffold12	Augustus	exon	562297	562420	.	+	.	ID=Dca5250.1.exon7;Parent=Dca5250.1
scaffold12	Augustus	exon	562749	562870	.	+	.	ID=Dca5250.1.exon8;Parent=Dca5250.1