Dca5461.1
Annotation
- 3-exons
- f-1
- sp|Q2R1L3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g38820#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold12093)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5461.1 |
27 |
313 |
385 |
49.87 |
287 |
63 |
5e-110
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R1L3_ORYSJ |
887 |
1194 |
1710 |
18.01 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5461.1 |
1 |
313 |
385 |
35.06 |
313 |
38 |
6e-67
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
187 |
538 |
707 |
49.78 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold12093 |
Augustus |
mRNA |
4875 |
6279 |
. |
- |
. |
ID=Dca5461.1;Parent=Dca5461 |
| scaffold12093 |
Augustus |
exon |
4875 |
5080 |
. |
- |
. |
ID=Dca5461.1.exon1;Parent=Dca5461.1 |
| scaffold12093 |
Augustus |
exon |
5222 |
5810 |
. |
- |
. |
ID=Dca5461.1.exon2;Parent=Dca5461.1 |
| scaffold12093 |
Augustus |
exon |
5917 |
6279 |
. |
- |
. |
ID=Dca5461.1.exon3;Parent=Dca5461.1 |
