Dca12078.1
Annotation
- 3-exons
- f-1
- sp|Q2QZV5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g44710#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold15474)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca12078.1 |
369 |
757 |
823 |
27.7 |
389 |
59 |
6e-135
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QZV5_ORYSJ |
22 |
410 |
1874 |
20.75 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca12078.1 |
37 |
303 |
823 |
14.7 |
267 |
45 |
5e-57
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
562 |
819 |
1539 |
16.76 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold15474 |
Augustus |
mRNA |
1 |
4376 |
. |
+ |
. |
ID=Dca12078.1;Parent=Dca12078 |
| scaffold15474 |
Augustus |
exon |
1 |
783 |
. |
+ |
. |
ID=Dca12078.1.exon1;Parent=Dca12078.1 |
| scaffold15474 |
Augustus |
exon |
1795 |
3418 |
. |
+ |
. |
ID=Dca12078.1.exon2;Parent=Dca12078.1 |
| scaffold15474 |
Augustus |
exon |
4312 |
4376 |
. |
+ |
. |
ID=Dca12078.1.exon3;Parent=Dca12078.1 |
