Carnation DB

Dca23480.1

Annotation

8-exons
f-1
sp|B9HFS0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_655493#GO:0016020;GO:0015297;GO:0015238#2F0P1C
AT5G65380.1 | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486
Repeat List (scaffold2344)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23480.1	31	499	499	71.54	469	77	0
Target_name	Start	End	Length	Cov(%)
sp\|B9HFS0_POPTR	20	488	488	96.1

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23480.1	17	499	499	66.13	483	69	0
Target_name	Start	End	Length	Cov(%)
AT5G65380.1	7	485	486	98.55

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2344	Augustus	mRNA	41161	43436	.	-	.	ID=Dca23480.1;Parent=Dca23480
scaffold2344	Augustus	exon	41161	41208	.	-	.	ID=Dca23480.1.exon1;Parent=Dca23480.1
scaffold2344	Augustus	exon	41319	41408	.	-	.	ID=Dca23480.1.exon2;Parent=Dca23480.1
scaffold2344	Augustus	exon	41521	41639	.	-	.	ID=Dca23480.1.exon3;Parent=Dca23480.1
scaffold2344	Augustus	exon	41720	41958	.	-	.	ID=Dca23480.1.exon4;Parent=Dca23480.1
scaffold2344	Augus-PASA	exon	42041	42097	.	-	.	ID=Dca23480.1.exon5;Parent=Dca23480.1
scaffold2344	Augus-PASA	exon	42264	42350	.	-	.	ID=Dca23480.1.exon6;Parent=Dca23480.1
scaffold2344	Augus-PASA	exon	42452	42993	.	-	.	ID=Dca23480.1.exon7;Parent=Dca23480.1
scaffold2344	Augus-PASA	exon	43119	43436	.	-	.	ID=Dca23480.1.exon8;Parent=Dca23480.1