Dca24354.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold2420)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca24354.1 |
88 |
134 |
323 |
8.04 |
47 |
45 |
9e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
319 |
376 |
1050 |
5.52 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca24354.1 |
128 |
296 |
323 |
17.33 |
169 |
33 |
1e-15
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1128 |
1288 |
1428 |
11.27 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2420 |
Augustus |
mRNA |
47100 |
50232 |
. |
+ |
. |
ID=Dca24354.1;Parent=Dca24354 |
| scaffold2420 |
Augustus |
exon |
47100 |
47477 |
. |
+ |
. |
ID=Dca24354.1.exon1;Parent=Dca24354.1 |
| scaffold2420 |
Augustus |
exon |
49639 |
50232 |
. |
+ |
. |
ID=Dca24354.1.exon2;Parent=Dca24354.1 |
