Dca33907.1
Annotation
- 4-exons
- f-1
- sp|B9HDY9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_819511#unknown#0F0P0C
- AT3G20430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr3:7121480-7123074 FORWARD LENGTH=265
- Repeat List (scaffold348)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33907.1 |
1 |
243 |
257 |
48.63 |
243 |
50 |
9e-53
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9HDY9_POPTR |
1 |
235 |
245 |
95.91 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33907.1 |
1 |
251 |
257 |
47.08 |
251 |
46 |
4e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G20430.1 |
1 |
258 |
265 |
97.35 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold348 |
Augustus |
mRNA |
95663 |
99476 |
. |
+ |
. |
ID=Dca33907.1;Parent=Dca33907 |
| scaffold348 |
Augustus |
exon |
95663 |
95943 |
. |
+ |
. |
ID=Dca33907.1.exon1;Parent=Dca33907.1 |
| scaffold348 |
Augus-PASA |
exon |
96856 |
96961 |
. |
+ |
. |
ID=Dca33907.1.exon2;Parent=Dca33907.1 |
| scaffold348 |
Augus-PASA |
exon |
98751 |
98894 |
. |
+ |
. |
ID=Dca33907.1.exon3;Parent=Dca33907.1 |
| scaffold348 |
Augus-PASA |
exon |
99234 |
99476 |
. |
+ |
. |
ID=Dca33907.1.exon4;Parent=Dca33907.1 |
