Carnation DB

Dca38231.1

Annotation

19-exons
f-1
sp|B9H264_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_817772#GO:0005634#0F0P1C
AT4G21660.2 | Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=598
Repeat List (scaffold4090)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38231.1	1	577	590	74.06	577	75	0
Target_name	Start	End	Length	Cov(%)
sp\|B9H264_POPTR	1	570	585	97.43

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38231.1	89	577	590	64.91	489	78	0
Target_name	Start	End	Length	Cov(%)
Os02t0827300-01	86	568	583	82.84

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4090	Augustus	mRNA	6748	14218	.	+	.	ID=Dca38231.1;Parent=Dca38231
scaffold4090	Augustus	exon	6748	6975	.	+	.	ID=Dca38231.1.exon1;Parent=Dca38231.1
scaffold4090	Augustus	exon	7691	7804	.	+	.	ID=Dca38231.1.exon2;Parent=Dca38231.1
scaffold4090	Augustus	exon	8050	8079	.	+	.	ID=Dca38231.1.exon3;Parent=Dca38231.1
scaffold4090	Augustus	exon	8178	8303	.	+	.	ID=Dca38231.1.exon4;Parent=Dca38231.1
scaffold4090	Augustus	exon	8401	8463	.	+	.	ID=Dca38231.1.exon5;Parent=Dca38231.1
scaffold4090	Augustus	exon	9007	9114	.	+	.	ID=Dca38231.1.exon6;Parent=Dca38231.1
scaffold4090	Augustus	exon	9633	9710	.	+	.	ID=Dca38231.1.exon7;Parent=Dca38231.1
scaffold4090	Augustus	exon	10440	10532	.	+	.	ID=Dca38231.1.exon8;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	10677	10763	.	+	.	ID=Dca38231.1.exon9;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	11466	11567	.	+	.	ID=Dca38231.1.exon10;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	12104	12223	.	+	.	ID=Dca38231.1.exon11;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	12312	12374	.	+	.	ID=Dca38231.1.exon12;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	12459	12604	.	+	.	ID=Dca38231.1.exon13;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	12999	13080	.	+	.	ID=Dca38231.1.exon14;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	13171	13229	.	+	.	ID=Dca38231.1.exon15;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	13330	13375	.	+	.	ID=Dca38231.1.exon16;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	13701	13792	.	+	.	ID=Dca38231.1.exon17;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	13985	14054	.	+	.	ID=Dca38231.1.exon18;Parent=Dca38231.1
scaffold4090	Augus-PASA	exon	14153	14218	.	+	.	ID=Dca38231.1.exon19;Parent=Dca38231.1