Carnation DB

Dca39598.1

Annotation

8-exons
f-1
sp|A5C749_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_021251#GO:0000166;GO:0003723;GO:0008270#3F0P0C
AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7399162-7401870 FORWARD LENGTH=602
Repeat List (scaffold43)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39598.1	1	595	601	50.24	595	43	3e-113
Target_name	Start	End	Length	Cov(%)
sp\|A5C749_VITVI	1	692	697	99.28

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39598.1	1	564	601	42.26	564	42	1e-89
Target_name	Start	End	Length	Cov(%)
AT3G21100.2	1	596	602	99

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold43	Augus-PASA	mRNA	160815	163720	.	+	.	ID=Dca39598.1;Parent=Dca39598
scaffold43	Augus-PASA	exon	160815	161578	.	+	.	ID=Dca39598.1.exon1;Parent=Dca39598.1
scaffold43	Augus-PASA	exon	162031	162198	.	+	.	ID=Dca39598.1.exon2;Parent=Dca39598.1
scaffold43	Augus-PASA	exon	162320	162499	.	+	.	ID=Dca39598.1.exon3;Parent=Dca39598.1
scaffold43	Augus-PASA	exon	162588	162679	.	+	.	ID=Dca39598.1.exon4;Parent=Dca39598.1
scaffold43	Augus-PASA	exon	162787	163014	.	+	.	ID=Dca39598.1.exon5;Parent=Dca39598.1
scaffold43	Augus-PASA	exon	163110	163242	.	+	.	ID=Dca39598.1.exon6;Parent=Dca39598.1
scaffold43	Augus-PASA	exon	163386	163589	.	+	.	ID=Dca39598.1.exon7;Parent=Dca39598.1
scaffold43	Augustus	exon	163684	163720	.	+	.	ID=Dca39598.1.exon8;Parent=Dca39598.1