Dca42046.1
Annotation
- 4-exons
- f-1
- sp|Q38HT1_SOLTU#Putative uncharacterized protein#Solanum tuberosum (Potato)#unknown#unknown#0F0P0C
- AT4G18230.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | chr4:10080521-10081710 REVERSE LENGTH=233
- Repeat List (scaffold47)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42046.1 |
8 |
152 |
152 |
61.18 |
145 |
43 |
1e-38
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q38HT1_SOLTU |
8 |
224 |
300 |
72.33 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42046.1 |
29 |
127 |
152 |
44.07 |
99 |
46 |
2e-31
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G18230.1 |
30 |
175 |
233 |
62.66 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold47 |
Augustus |
mRNA |
381259 |
384259 |
. |
+ |
. |
ID=Dca42046.1;Parent=Dca42046 |
| scaffold47 |
Augustus |
exon |
381259 |
381436 |
. |
+ |
. |
ID=Dca42046.1.exon1;Parent=Dca42046.1 |
| scaffold47 |
Augustus |
exon |
381696 |
381838 |
. |
+ |
. |
ID=Dca42046.1.exon2;Parent=Dca42046.1 |
| scaffold47 |
Augustus |
exon |
383910 |
383969 |
. |
+ |
. |
ID=Dca42046.1.exon3;Parent=Dca42046.1 |
| scaffold47 |
Augustus |
exon |
384182 |
384259 |
. |
+ |
. |
ID=Dca42046.1.exon4;Parent=Dca42046.1 |
