Carnation DB

Dca42455.1

Annotation

6-exons
f-1
sp|B9GW81_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_554947#unknown#0F0P0C
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18943802-18945613 REVERSE LENGTH=379
Repeat List (scaffold4775)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42455.1	1	418	418	48.08	418	45	1e-80
Target_name	Start	End	Length	Cov(%)
sp\|B9GW81_POPTR	1	418	422	99.05

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42455.1	1	417	418	35.88	417	35	3e-50
Target_name	Start	End	Length	Cov(%)
AT1G51140.1	1	377	379	99.47

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4775	Augustus	mRNA	9420	11438	.	+	.	ID=Dca42455.1;Parent=Dca42455
scaffold4775	Augustus	exon	9420	10014	.	+	.	ID=Dca42455.1.exon1;Parent=Dca42455.1
scaffold4775	Augustus	exon	10174	10490	.	+	.	ID=Dca42455.1.exon2;Parent=Dca42455.1
scaffold4775	Augus-PASA	exon	10577	10744	.	+	.	ID=Dca42455.1.exon3;Parent=Dca42455.1
scaffold4775	Augus-PASA	exon	10852	10917	.	+	.	ID=Dca42455.1.exon4;Parent=Dca42455.1
scaffold4775	Augus-PASA	exon	11046	11114	.	+	.	ID=Dca42455.1.exon5;Parent=Dca42455.1
scaffold4775	Augus-PASA	exon	11397	11438	.	+	.	ID=Dca42455.1.exon6;Parent=Dca42455.1