Carnation DB

Dca42872.1

Annotation

6-exons
f-1
sp|B9HUA1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_658381#unknown#0F0P0C
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:8300077-8301503 FORWARD LENGTH=283
Repeat List (scaffold484)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42872.1	88	275	275	40.72	188	60	4e-57
Target_name	Start	End	Length	Cov(%)
sp\|B9HUA1_POPTR	38	221	221	83.25

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42872.1	55	275	275	42.18	221	52	8e-53
Target_name	Start	End	Length	Cov(%)
AT4G14410.1	60	283	283	79.15

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold484	Augus-PASA	mRNA	131672	135659	.	-	.	ID=Dca42872.1;Parent=Dca42872
scaffold484	Augus-PASA	exon	131672	131923	.	-	.	ID=Dca42872.1.exon1;Parent=Dca42872.1
scaffold484	Augus-PASA	exon	132192	132354	.	-	.	ID=Dca42872.1.exon2;Parent=Dca42872.1
scaffold484	Augus-PASA	exon	132447	132524	.	-	.	ID=Dca42872.1.exon3;Parent=Dca42872.1
scaffold484	Augus-PASA	exon	132614	132697	.	-	.	ID=Dca42872.1.exon4;Parent=Dca42872.1
scaffold484	Augustus	exon	132792	132872	.	-	.	ID=Dca42872.1.exon5;Parent=Dca42872.1
scaffold484	Augustus	exon	135490	135659	.	-	.	ID=Dca42872.1.exon6;Parent=Dca42872.1