Carnation DB

Dca45896.1

Annotation

7-exons
f-1
sp|Q8LLZ2_ORYSJ#Putative retroelement#Oryza sativa subsp japonica (Rice)#Name=OSJNAa0028C16.13#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
Repeat List (scaffold5424)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45896.1	11	808	809	57.97	798	49	0
Target_name	Start	End	Length	Cov(%)
sp\|Q8LLZ2_ORYSJ	808	1780	1786	54.47

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45896.1	23	801	809	36.95	779	33	3e-118
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	562	1475	1539	59.38

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5424	Augustus	mRNA	14482	17535	.	+	.	ID=Dca45896.1;Parent=Dca45896
scaffold5424	Augustus	exon	14482	14499	.	+	.	ID=Dca45896.1.exon1;Parent=Dca45896.1
scaffold5424	Augustus	exon	14597	14917	.	+	.	ID=Dca45896.1.exon2;Parent=Dca45896.1
scaffold5424	Augustus	exon	14999	15259	.	+	.	ID=Dca45896.1.exon3;Parent=Dca45896.1
scaffold5424	Augustus	exon	15362	16108	.	+	.	ID=Dca45896.1.exon4;Parent=Dca45896.1
scaffold5424	Augustus	exon	16217	16426	.	+	.	ID=Dca45896.1.exon5;Parent=Dca45896.1
scaffold5424	Augustus	exon	16555	16989	.	+	.	ID=Dca45896.1.exon6;Parent=Dca45896.1
scaffold5424	Augustus	exon	17098	17535	.	+	.	ID=Dca45896.1.exon7;Parent=Dca45896.1