Dca46330.1
Annotation
- 3-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold5517)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46330.1 |
247 |
463 |
463 |
30.88 |
217 |
55 |
1e-72
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
574 |
837 |
964 |
27.38 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46330.1 |
1 |
250 |
463 |
20.73 |
250 |
38 |
3e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
499 |
754 |
1428 |
17.92 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5517 |
Augustus |
mRNA |
12775 |
15336 |
. |
- |
. |
ID=Dca46330.1;Parent=Dca46330 |
| scaffold5517 |
Augustus |
exon |
12775 |
13153 |
. |
- |
. |
ID=Dca46330.1.exon1;Parent=Dca46330.1 |
| scaffold5517 |
Augustus |
exon |
13293 |
13566 |
. |
- |
. |
ID=Dca46330.1.exon2;Parent=Dca46330.1 |
| scaffold5517 |
Augustus |
exon |
14598 |
15336 |
. |
- |
. |
ID=Dca46330.1.exon3;Parent=Dca46330.1 |
