Dca46455.1
Annotation
- 4-exons
- f-1
- sp|A2I5E5_BETVU#Retrotransposon protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold5548)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46455.1 |
2 |
507 |
507 |
45.36 |
506 |
41 |
1e-106
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A2I5E5_BETVU |
85 |
638 |
1501 |
36.9 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46455.1 |
335 |
507 |
507 |
13.21 |
173 |
34 |
7e-25
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
128 |
327 |
707 |
28.28 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5548 |
Augustus |
mRNA |
12343 |
14448 |
. |
- |
. |
ID=Dca46455.1;Parent=Dca46455 |
| scaffold5548 |
Augustus |
exon |
12343 |
12645 |
. |
- |
. |
ID=Dca46455.1.exon1;Parent=Dca46455.1 |
| scaffold5548 |
Augustus |
exon |
12715 |
12953 |
. |
- |
. |
ID=Dca46455.1.exon2;Parent=Dca46455.1 |
| scaffold5548 |
Augustus |
exon |
13119 |
13953 |
. |
- |
. |
ID=Dca46455.1.exon3;Parent=Dca46455.1 |
| scaffold5548 |
Augustus |
exon |
14302 |
14448 |
. |
- |
. |
ID=Dca46455.1.exon4;Parent=Dca46455.1 |
