Dca55245.1
Annotation
- 3-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold7668)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55245.1 |
9 |
350 |
350 |
54.57 |
342 |
45 |
9e-85
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
446 |
849 |
932 |
43.34 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55245.1 |
22 |
236 |
350 |
23.42 |
215 |
38 |
8e-39
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
896 |
1109 |
1428 |
14.98 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7668 |
Augustus |
mRNA |
13704 |
15122 |
. |
+ |
. |
ID=Dca55245.1;Parent=Dca55245 |
| scaffold7668 |
Augustus |
exon |
13704 |
14324 |
. |
+ |
. |
ID=Dca55245.1.exon1;Parent=Dca55245.1 |
| scaffold7668 |
Augustus |
exon |
14580 |
14823 |
. |
+ |
. |
ID=Dca55245.1.exon2;Parent=Dca55245.1 |
| scaffold7668 |
Augustus |
exon |
14935 |
15122 |
. |
+ |
. |
ID=Dca55245.1.exon3;Parent=Dca55245.1 |
