Carnation DB

Dca55368.1

Annotation

8-exons
f-1
sp|B9HLK4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_720702#GO:0005783;GO:0016021;GO:0004579;GO:0006486#1F1P2C
AT2G01720.1 | Symbols: | Ribophorin I | chr2:317193-320016 REVERSE LENGTH=464
Repeat List (scaffold77)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55368.1	17	468	472	68.64	452	72	0
Target_name	Start	End	Length	Cov(%)
sp\|B9HLK4_POPTR	17	469	469	96.58

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55368.1	9	468	472	62.28	460	64	2e-176
Target_name	Start	End	Length	Cov(%)
AT2G01720.1	2	463	464	99.56

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold77	Augus-PASA	mRNA	345273	351734	.	+	.	ID=Dca55368.1;Parent=Dca55368
scaffold77	Augus-PASA	exon	345273	345395	.	+	.	ID=Dca55368.1.exon1;Parent=Dca55368.1
scaffold77	Augus-PASA	exon	345498	345542	.	+	.	ID=Dca55368.1.exon2;Parent=Dca55368.1
scaffold77	Augus-PASA	exon	346725	347353	.	+	.	ID=Dca55368.1.exon3;Parent=Dca55368.1
scaffold77	Augus-PASA	exon	348281	348428	.	+	.	ID=Dca55368.1.exon4;Parent=Dca55368.1
scaffold77	Augus-PASA	exon	349964	350143	.	+	.	ID=Dca55368.1.exon5;Parent=Dca55368.1
scaffold77	Augus-PASA	exon	350262	350330	.	+	.	ID=Dca55368.1.exon6;Parent=Dca55368.1
scaffold77	Augus-PASA	exon	350677	350766	.	+	.	ID=Dca55368.1.exon7;Parent=Dca55368.1
scaffold77	Augus-PASA	exon	351600	351734	.	+	.	ID=Dca55368.1.exon8;Parent=Dca55368.1