Carnation DB

Dca55836.1

Annotation

7-exons
f-1
sp|A5AHX3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_022963#GO:0003723;GO:0003964;GO:0006278#2F1P0C
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23388884-23390728 REVERSE LENGTH=614
Repeat List (scaffold7829)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55836.1	13	437	692	26.87	425	37	9e-90
Target_name	Start	End	Length	Cov(%)
sp\|A5AHX3_VITVI	47	554	2021	25.13

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55836.1	13	450	692	24.42	438	31	1e-74
Target_name	Start	End	Length	Cov(%)
AT1G63080.1	47	602	614	90.55

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold7829	Augustus	mRNA	152	4849	.	-	.	ID=Dca55836.1;Parent=Dca55836
scaffold7829	Augustus	exon	152	501	.	-	.	ID=Dca55836.1.exon1;Parent=Dca55836.1
scaffold7829	Augustus	exon	628	733	.	-	.	ID=Dca55836.1.exon2;Parent=Dca55836.1
scaffold7829	Augustus	exon	1423	1485	.	-	.	ID=Dca55836.1.exon3;Parent=Dca55836.1
scaffold7829	Augustus	exon	1580	1657	.	-	.	ID=Dca55836.1.exon4;Parent=Dca55836.1
scaffold7829	Augustus	exon	1742	1814	.	-	.	ID=Dca55836.1.exon5;Parent=Dca55836.1
scaffold7829	Augustus	exon	3286	4169	.	-	.	ID=Dca55836.1.exon6;Parent=Dca55836.1
scaffold7829	Augustus	exon	4325	4849	.	-	.	ID=Dca55836.1.exon7;Parent=Dca55836.1