Dca55957.1
Annotation
- 4-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold7863)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55957.1 |
355 |
622 |
623 |
24.55 |
268 |
57 |
1e-81
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
171 |
441 |
964 |
28.11 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55957.1 |
355 |
546 |
623 |
12.68 |
192 |
41 |
1e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
585 |
779 |
1428 |
13.65 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7863 |
Augustus |
mRNA |
1061 |
3719 |
. |
- |
. |
ID=Dca55957.1;Parent=Dca55957 |
| scaffold7863 |
Augustus |
exon |
1061 |
1868 |
. |
- |
. |
ID=Dca55957.1.exon1;Parent=Dca55957.1 |
| scaffold7863 |
Augustus |
exon |
2464 |
2494 |
. |
- |
. |
ID=Dca55957.1.exon2;Parent=Dca55957.1 |
| scaffold7863 |
Augustus |
exon |
2596 |
3300 |
. |
- |
. |
ID=Dca55957.1.exon3;Parent=Dca55957.1 |
| scaffold7863 |
Augustus |
exon |
3392 |
3719 |
. |
- |
. |
ID=Dca55957.1.exon4;Parent=Dca55957.1 |
