Dca56148.1
Annotation
- 2-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold791)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56148.1 |
7 |
272 |
272 |
41.54 |
266 |
40 |
8e-44
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
202 |
487 |
932 |
30.68 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56148.1 |
70 |
184 |
272 |
13.97 |
115 |
32 |
2e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
661 |
779 |
1428 |
8.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold791 |
Augustus |
mRNA |
214003 |
215084 |
. |
- |
. |
ID=Dca56148.1;Parent=Dca56148 |
| scaffold791 |
Augustus |
exon |
214003 |
214612 |
. |
- |
. |
ID=Dca56148.1.exon1;Parent=Dca56148.1 |
| scaffold791 |
Augustus |
exon |
214876 |
215084 |
. |
- |
. |
ID=Dca56148.1.exon2;Parent=Dca56148.1 |
