Carnation DB

Dca8909.1

Annotation

8-exons
f-1
sp|D7U5F3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_03s0038g00920#GO:0016773#1F0P0C
sp|B9RZB6_RICCO#Pentatricopeptide repeat-containing protein, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0937540#GO:0005488;GO:0016773#2F0P0C
Repeat List (scaffold138)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8909.1	9	391	391	54.21	383	56	1e-114
Target_name	Start	End	Length	Cov(%)
sp\|D7U5F3_VITVI	44	426	426	89.9

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8909.1	9	391	391	49.36	383	50	3e-103
Target_name	Start	End	Length	Cov(%)
AT1G49350.1	4	377	378	98.94

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold138	Augus-PASA	mRNA	260544	263868	.	-	.	ID=Dca8909.1;Parent=Dca8909
scaffold138	Augus-PASA	exon	260544	260602	.	-	.	ID=Dca8909.1.exon1;Parent=Dca8909.1
scaffold138	PASA	exon	260752	261316	.	-	.	ID=Dca8909.1.exon2;Parent=Dca8909.1
scaffold138	Augustus	exon	261489	261571	.	-	.	ID=Dca8909.1.exon3;Parent=Dca8909.1
scaffold138	Augustus	exon	262084	262198	.	-	.	ID=Dca8909.1.exon4;Parent=Dca8909.1
scaffold138	Augustus	exon	262341	262438	.	-	.	ID=Dca8909.1.exon5;Parent=Dca8909.1
scaffold138	Augustus	exon	262739	262786	.	-	.	ID=Dca8909.1.exon6;Parent=Dca8909.1
scaffold138	Augustus	exon	262999	263101	.	-	.	ID=Dca8909.1.exon7;Parent=Dca8909.1
scaffold138	Augustus	exon	263764	263868	.	-	.	ID=Dca8909.1.exon8;Parent=Dca8909.1