scaffold10332 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold10332 |
61 |
313 |
- |
RS3405 |
Unspecified |
| scaffold10332 |
354 |
521 |
- |
RS4894 |
Unspecified |
| scaffold10332 |
771 |
1002 |
+ |
RS760 |
Unspecified |
| scaffold10332 |
845 |
1149 |
- |
RS2078 |
Unspecified |
| scaffold10332 |
1326 |
1540 |
- |
RS2078 |
Unspecified |
| scaffold10332 |
1546 |
1604 |
- |
Gypsy-118_GM-I |
LTR/Gypsy |
| scaffold10332 |
1682 |
1743 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
1903 |
1948 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
2307 |
2340 |
+ |
(TAGGATG)n |
Simple_repeat |
| scaffold10332 |
2353 |
2495 |
+ |
(TA)n |
Simple_repeat |
| scaffold10332 |
2353 |
2392 |
+ |
(TA)n |
Simple_repeat |
| scaffold10332 |
2380 |
2495 |
+ |
RS7234 |
Unspecified |
| scaffold10332 |
2789 |
2820 |
+ |
(AT)n |
Simple_repeat |
| scaffold10332 |
4302 |
4334 |
+ |
(TA)n |
Simple_repeat |
| scaffold10332 |
5036 |
5493 |
- |
RS12652 |
Unspecified |
| scaffold10332 |
5701 |
5756 |
+ |
(ATGAAC)n |
Simple_repeat |
| scaffold10332 |
7987 |
8164 |
- |
RS13071 |
Unspecified |
| scaffold10332 |
10168 |
10199 |
+ |
(TA)n |
Simple_repeat |
| scaffold10332 |
11091 |
11888 |
- |
RS245 |
Unspecified |
| scaffold10332 |
12340 |
13323 |
- |
PL172 |
Unspecified |
| scaffold10332 |
13322 |
14329 |
- |
RS245 |
Unspecified |
| scaffold10332 |
14411 |
14461 |
+ |
(ACCCGA)n |
Simple_repeat |
| scaffold10332 |
14701 |
14739 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
15336 |
15439 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold10332 |
19928 |
19975 |
+ |
GA-rich |
Low_complexity |
| scaffold10332 |
20269 |
20295 |
+ |
(ATTAG)n |
Simple_repeat |
| scaffold10332 |
20604 |
20653 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold10332 |
20841 |
20907 |
+ |
(TTTTAAT)n |
Simple_repeat |
| scaffold10332 |
21093 |
21135 |
+ |
(ATAAC)n |
Simple_repeat |
| scaffold10332 |
21384 |
21429 |
+ |
(TAT)n |
Simple_repeat |
| scaffold10332 |
21436 |
21790 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
21436 |
21480 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
21467 |
21790 |
- |
RS976 |
Unspecified |
| scaffold10332 |
21835 |
21917 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
22469 |
22520 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
22966 |
23118 |
+ |
(AATTTA)n |
Simple_repeat |
| scaffold10332 |
22968 |
23118 |
+ |
(AATTTA)n |
Simple_repeat |
| scaffold10332 |
23001 |
23118 |
+ |
(AATTTA)n |
Simple_repeat |
| scaffold10332 |
23076 |
23113 |
- |
PL953 |
Unspecified |
| scaffold10332 |
23166 |
23199 |
+ |
(ATTAC)n |
Simple_repeat |
| scaffold10332 |
23830 |
23854 |
+ |
(A)n |
Simple_repeat |
| scaffold10332 |
24405 |
24472 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold10332 |
24770 |
24809 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold10332 |
24910 |
25002 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold10332 |
25875 |
25911 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
27892 |
28082 |
+ |
RS908 |
Unspecified |
| scaffold10332 |
28385 |
28429 |
+ |
(TAT)n |
Simple_repeat |
| scaffold10332 |
29833 |
29885 |
+ |
(TATTTAT)n |
Simple_repeat |
| scaffold10332 |
30137 |
30185 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold10332 |
30281 |
30931 |
- |
PL505 |
Unspecified |
| scaffold10332 |
31556 |
31597 |
+ |
(TATT)n |
Simple_repeat |
| scaffold10332 |
31598 |
31628 |
+ |
(T)n |
Simple_repeat |
| scaffold10332 |
32092 |
32150 |
+ |
(TAATTAT)n |
Simple_repeat |
| scaffold10332 |
32510 |
32567 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
33157 |
33849 |
+ |
PL855 |
Unspecified |
| scaffold10332 |
34482 |
34555 |
+ |
(T)n |
Simple_repeat |
| scaffold10332 |
34482 |
34902 |
+ |
(T)n |
Simple_repeat |
| scaffold10332 |
34538 |
34902 |
+ |
RS922 |
Unspecified |
| scaffold10332 |
35083 |
35117 |
+ |
(AT)n |
Simple_repeat |
| scaffold10332 |
35600 |
35662 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold10332 |
35999 |
36171 |
+ |
RS503 |
Unspecified |
| scaffold10332 |
36946 |
36989 |
+ |
(TA)n |
Simple_repeat |
| scaffold10332 |
37364 |
37390 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold10332 |
37627 |
37644 |
+ |
(A)n |
Simple_repeat |
| scaffold10332 |
38573 |
38796 |
- |
RS537 |
Unspecified |
| scaffold10332 |
38920 |
39020 |
- |
PL622 |
Unspecified |
| scaffold10332 |
39044 |
39094 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold10332 |
39328 |
39749 |
+ |
RS6405 |
Unspecified |
| scaffold10332 |
39761 |
39811 |
+ |
(TT)n |
Simple_repeat |
| scaffold10332 |
40338 |
40536 |
- |
RS86 |
Unspecified |
| scaffold10332 |
41380 |
41484 |
+ |
PL340 |
Unspecified |
| scaffold10332 |
41484 |
41809 |
- |
RS7475 |
Unspecified |
| scaffold10332 |
44431 |
44512 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
44739 |
44781 |
- |
RS15010 |
Unspecified |
| scaffold10332 |
45453 |
45516 |
- |
RS15010 |
Unspecified |
| scaffold10332 |
45556 |
45703 |
+ |
RS33 |
Unspecified |
| scaffold10332 |
46297 |
46585 |
+ |
RS3075 |
Unspecified |
| scaffold10332 |
47046 |
47078 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold10332 |
49568 |
49596 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold10332 |
49880 |
49955 |
- |
RS1813 |
Unspecified |
| scaffold10332 |
50648 |
50708 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold10332 |
51658 |
51750 |
+ |
(GACTGA)n |
Simple_repeat |
| scaffold10332 |
52659 |
52761 |
+ |
RS527 |
Unspecified |
| scaffold10332 |
53114 |
53174 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold10332 |
54138 |
54230 |
+ |
(TCAGAC)n |
Simple_repeat |
| scaffold10332 |
54293 |
54358 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold10332 |
55581 |
55614 |
+ |
(CGACC)n |
Simple_repeat |
| scaffold10332 |
56318 |
56758 |
+ |
PL400 |
Unspecified |
| scaffold10332 |
58478 |
58504 |
+ |
(T)n |
Simple_repeat |
| scaffold10332 |
58935 |
58984 |
+ |
HAT-N15_Mad |
DNA/hAT-Tip100 |
| scaffold10332 |
59232 |
61006 |
- |
RS398 |
Unspecified |
| scaffold10332 |
61039 |
61319 |
+ |
RS29 |
Unspecified |
| scaffold10332 |
61378 |
61507 |
- |
PL683 |
Unspecified |
| scaffold10332 |
61395 |
61969 |
- |
PL8 |
Unspecified |
| scaffold10332 |
61861 |
61988 |
+ |
PL536 |
Unspecified |
| scaffold10332 |
62494 |
62539 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
63167 |
63313 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10332 |
63348 |
63441 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10332 |
63497 |
63677 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10332 |
63497 |
63623 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10332 |
63617 |
63677 |
+ |
RS17 |
Unspecified |
| scaffold10332 |
66585 |
66635 |
+ |
(GAT)n |
Simple_repeat |
| scaffold10332 |
66841 |
66878 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
67373 |
67428 |
- |
HAT-14_Mad |
DNA/hAT-Tip100 |
| scaffold10332 |
67561 |
67703 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
67847 |
67882 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
67906 |
67952 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
67906 |
68096 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
67940 |
68096 |
- |
RS13266 |
Unspecified |
| scaffold10332 |
68429 |
68490 |
+ |
RS223 |
Unspecified |
| scaffold10332 |
68510 |
68565 |
+ |
G-rich |
Low_complexity |
| scaffold10332 |
68631 |
69065 |
- |
PL9 |
Unspecified |
| scaffold10332 |
69307 |
69346 |
+ |
(TCCCT)n |
Simple_repeat |
| scaffold10332 |
69853 |
70190 |
- |
RS17843 |
Unspecified |
| scaffold10332 |
70049 |
70220 |
+ |
RS9481 |
Unspecified |
| scaffold10332 |
70176 |
70323 |
+ |
RS18255 |
Unspecified |
| scaffold10332 |
70599 |
70781 |
+ |
RS3094 |
Unspecified |
| scaffold10332 |
70673 |
70832 |
- |
RS1714 |
Unspecified |
| scaffold10332 |
70946 |
71152 |
- |
RS1714 |
Unspecified |
| scaffold10332 |
71240 |
71395 |
+ |
RS2126 |
Unspecified |
| scaffold10332 |
71769 |
71811 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
72141 |
72339 |
- |
RS1714 |
Unspecified |
| scaffold10332 |
72445 |
72581 |
+ |
RS2126 |
Unspecified |
| scaffold10332 |
72957 |
72999 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
74595 |
74614 |
+ |
(A)n |
Simple_repeat |
| scaffold10332 |
74788 |
74982 |
- |
RS18405 |
Unspecified |
| scaffold10332 |
75626 |
75677 |
+ |
(AT)n |
Simple_repeat |
| scaffold10332 |
76473 |
76700 |
- |
RS257 |
Unspecified |
| scaffold10332 |
76912 |
76958 |
- |
RS257 |
Unspecified |
| scaffold10332 |
76973 |
77142 |
- |
RS1102 |
Unspecified |
| scaffold10332 |
77001 |
77182 |
+ |
RS544 |
Unspecified |
| scaffold10332 |
77621 |
77658 |
+ |
(GTG)n |
Simple_repeat |
| scaffold10332 |
77744 |
77819 |
+ |
(GTG)n |
Simple_repeat |
| scaffold10332 |
78713 |
78742 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold10332 |
79724 |
80163 |
+ |
RS1296 |
Unspecified |
| scaffold10332 |
80488 |
81349 |
+ |
Copia-101_Mad-I |
LTR/Copia |
| scaffold10332 |
81571 |
81598 |
+ |
(T)n |
Simple_repeat |
| scaffold10332 |
81691 |
81873 |
- |
RS2380 |
Unspecified |
| scaffold10332 |
82519 |
82684 |
- |
RS2587 |
Unspecified |
| scaffold10332 |
82686 |
82918 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
82886 |
82918 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
84443 |
84498 |
+ |
A-rich |
Low_complexity |
| scaffold10332 |
84897 |
84916 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold10332 |
84917 |
84944 |
+ |
(ATATG)n |
Simple_repeat |
| scaffold10332 |
84945 |
84982 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold10332 |
85069 |
85098 |
+ |
(A)n |
Simple_repeat |
| scaffold10332 |
85151 |
85450 |
- |
RS3355 |
Unspecified |
| scaffold10332 |
85568 |
85885 |
- |
RS2587 |
Unspecified |
| scaffold10332 |
87406 |
87490 |
- |
PL289 |
Unspecified |
| scaffold10332 |
87526 |
87593 |
- |
RS2663 |
Unspecified |
| scaffold10332 |
87588 |
87752 |
+ |
RS1943 |
Unspecified |
| scaffold10332 |
87796 |
87913 |
+ |
RS1943 |
Unspecified |
| scaffold10332 |
88210 |
88973 |
+ |
Copia-101_Mad-I |
LTR/Copia |
| scaffold10332 |
88972 |
89364 |
+ |
RS8672 |
Unspecified |
| scaffold10332 |
89634 |
90221 |
+ |
Copia-101_Mad-I |
LTR/Copia |
| scaffold10332 |
90341 |
90915 |
+ |
RS1275 |
Unspecified |
| scaffold10332 |
90752 |
90943 |
- |
RS8043 |
Unspecified |
| scaffold10332 |
91404 |
91444 |
+ |
(ACTATGT)n |
Simple_repeat |
| scaffold10332 |
91469 |
91740 |
- |
PL859 |
Unspecified |
| scaffold10332 |
91628 |
91790 |
- |
RS14472 |
Unspecified |
| scaffold10332 |
91796 |
92488 |
+ |
RS458 |
Unspecified |
| scaffold10332 |
93716 |
93929 |
+ |
RS1275 |
Unspecified |
| scaffold10332 |
94222 |
94256 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold10332 |
94264 |
94297 |
+ |
(A)n |
Simple_repeat |
| scaffold10332 |
95289 |
95323 |
+ |
(ATT)n |
Simple_repeat |
| scaffold10332 |
95363 |
95395 |
+ |
(TTA)n |
Simple_repeat |
| scaffold10332 |
96988 |
97013 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold10332 |
98128 |
98162 |
+ |
(GTG)n |
Simple_repeat |
| scaffold10332 |
98744 |
98836 |
+ |
RS128 |
Unspecified |
| scaffold10332 |
98869 |
98953 |
- |
RS210 |
Unspecified |
| scaffold10332 |
98947 |
99035 |
- |
RS18361 |
Unspecified |
| scaffold10332 |
99631 |
99725 |
+ |
RS8095 |
Unspecified |
| scaffold10332 |
99908 |
100015 |
+ |
(ATT)n |
Simple_repeat |
| scaffold10332 |
100818 |
100927 |
+ |
RS1098 |
Unspecified |
| scaffold10332 |
101167 |
101214 |
+ |
(GGAT)n |
Simple_repeat |
| scaffold10332 |
101607 |
101635 |
+ |
(ACCCGA)n |
Simple_repeat |
| scaffold10332 |
101852 |
101881 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold10332 |
101930 |
101991 |
+ |
(ATTTTTA)n |
Simple_repeat |
| scaffold10332 |
102469 |
102556 |
- |
RS2719 |
Unspecified |
| scaffold10332 |
102553 |
102786 |
- |
RS376 |
Unspecified |
| scaffold10332 |
103576 |
103676 |
+ |
RS1098 |
Unspecified |
| scaffold10332 |
103990 |
104019 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold10332 |
104068 |
104127 |
+ |
(ATTTTTA)n |
Simple_repeat |
| scaffold10332 |
108466 |
108545 |
+ |
SZ-30_int-int |
LTR/Copia |
| scaffold10332 |
111469 |
111508 |
+ |
(ATTTTTA)n |
Simple_repeat |
| scaffold10332 |
114706 |
114789 |
- |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold10332 |
114781 |
114947 |
- |
RS573 |
Unspecified |
| scaffold10332 |
117299 |
117363 |
+ |
(TTC)n |
Simple_repeat |
| scaffold10332 |
117460 |
117588 |
- |
RS38 |
Unspecified |
| scaffold10332 |
117613 |
117659 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold10332 |
117655 |
118011 |
+ |
PL2 |
Unspecified |
| scaffold10332 |
118026 |
118104 |
+ |
RS10 |
Unspecified |
| scaffold10332 |
118578 |
119489 |
- |
RS1129 |
Unspecified |
| scaffold10332 |
119563 |
119685 |
- |
RS3665 |
Unspecified |
| scaffold10332 |
119792 |
119873 |
+ |
RS3039 |
Unspecified |
| scaffold10332 |
119803 |
119940 |
- |
RS5687 |
Unspecified |
| scaffold10332 |
120084 |
120262 |
+ |
RS3039 |
Unspecified |
| scaffold10332 |
120183 |
120272 |
- |
RS1614 |
Unspecified |
| scaffold10332 |
120394 |
120612 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold10332 |
121077 |
121113 |
+ |
(TTGAT)n |
Simple_repeat |
| scaffold10332 |
122283 |
122314 |
+ |
(TTCAAT)n |
Simple_repeat |
| scaffold10332 |
122838 |
122859 |
+ |
(TCTCTT)n |
Simple_repeat |
| scaffold10332 |
122860 |
122885 |
+ |
(T)n |
Simple_repeat |
| scaffold10332 |
122886 |
122899 |
+ |
(TCTCTT)n |
Simple_repeat |
| scaffold10332 |
128073 |
128220 |
+ |
(CCGCC)n |
Simple_repeat |
| scaffold10332 |
128189 |
128220 |
+ |
(CCGCC)n |
Simple_repeat |
| scaffold10332 |
128418 |
128460 |
+ |
(T)n |
Simple_repeat |
| scaffold10332 |
128564 |
128591 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold10332 |
129171 |
129189 |
+ |
(T)n |
Simple_repeat |