scaffold1099 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1099 |
1 |
91 |
- |
RS1173 |
Unspecified |
| scaffold1099 |
645 |
699 |
- |
LCCopia1_I-int |
LTR/Copia |
| scaffold1099 |
1221 |
1328 |
+ |
RS16494 |
Unspecified |
| scaffold1099 |
1645 |
1696 |
+ |
(T)n |
Simple_repeat |
| scaffold1099 |
3853 |
3894 |
- |
Copia-10_TC-I |
LTR/Copia |
| scaffold1099 |
4585 |
4603 |
+ |
(T)n |
Simple_repeat |
| scaffold1099 |
4622 |
4646 |
+ |
(T)n |
Simple_repeat |
| scaffold1099 |
7152 |
9305 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold1099 |
7156 |
8324 |
- |
Copia-105_GM-I |
LTR/Copia |
| scaffold1099 |
9663 |
10289 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold1099 |
9945 |
10019 |
- |
Copia-105_GM-I |
LTR/Copia |
| scaffold1099 |
9988 |
10271 |
- |
Copia-105_GM-I |
LTR/Copia |
| scaffold1099 |
10579 |
10616 |
+ |
A-rich |
Low_complexity |
| scaffold1099 |
10641 |
10732 |
- |
Copia-36_BD-I |
LTR/Copia |
| scaffold1099 |
10708 |
10842 |
- |
Copia-10_TC-I |
LTR/Copia |
| scaffold1099 |
12161 |
12616 |
+ |
RS4906 |
Unspecified |
| scaffold1099 |
12735 |
13039 |
- |
RS105 |
Unspecified |
| scaffold1099 |
13378 |
13601 |
+ |
RS1007 |
Unspecified |
| scaffold1099 |
13616 |
13649 |
+ |
SZ-7_int-int |
LTR/Gypsy |
| scaffold1099 |
14166 |
15361 |
- |
PL933 |
Unspecified |
| scaffold1099 |
14357 |
15427 |
+ |
RS412 |
Unspecified |
| scaffold1099 |
15312 |
15466 |
- |
RS1865 |
Unspecified |
| scaffold1099 |
15474 |
16476 |
- |
RS254 |
Unspecified |
| scaffold1099 |
16468 |
16886 |
+ |
RS412 |
Unspecified |
| scaffold1099 |
17002 |
17226 |
+ |
L1-15_GM |
LINE/L1 |
| scaffold1099 |
17928 |
18375 |
+ |
L1-1_PTr |
LINE/L1 |
| scaffold1099 |
18697 |
18861 |
+ |
L1-15_GM |
LINE/L1 |
| scaffold1099 |
20446 |
20910 |
+ |
RS2346 |
Unspecified |
| scaffold1099 |
20921 |
20977 |
+ |
RS18046 |
Unspecified |
| scaffold1099 |
20957 |
21148 |
+ |
RS8831 |
Unspecified |
| scaffold1099 |
21231 |
21290 |
+ |
(CA)n |
Simple_repeat |
| scaffold1099 |
22513 |
22569 |
+ |
(TA)n |
Simple_repeat |
| scaffold1099 |
22644 |
22674 |
+ |
(AT)n |
Simple_repeat |
| scaffold1099 |
22895 |
22999 |
+ |
RS6642 |
Unspecified |
| scaffold1099 |
23015 |
23451 |
+ |
RS304 |
Unspecified |
| scaffold1099 |
23152 |
23772 |
+ |
RS2048 |
Unspecified |
| scaffold1099 |
24450 |
24524 |
+ |
GA-rich |
Low_complexity |
| scaffold1099 |
24721 |
24820 |
+ |
(TA)n |
Simple_repeat |
| scaffold1099 |
24891 |
24909 |
+ |
(T)n |
Simple_repeat |
| scaffold1099 |
25376 |
25736 |
- |
RS3768 |
Unspecified |
| scaffold1099 |
29324 |
29417 |
- |
RS713 |
Unspecified |
| scaffold1099 |
29427 |
29891 |
+ |
RS2346 |
Unspecified |
| scaffold1099 |
29902 |
29958 |
+ |
RS18046 |
Unspecified |
| scaffold1099 |
29938 |
30129 |
+ |
RS8831 |
Unspecified |
| scaffold1099 |
30212 |
30271 |
+ |
(CA)n |
Simple_repeat |
| scaffold1099 |
31494 |
31550 |
+ |
(TA)n |
Simple_repeat |
| scaffold1099 |
31625 |
31655 |
+ |
(AT)n |
Simple_repeat |
| scaffold1099 |
31876 |
31980 |
+ |
RS6642 |
Unspecified |
| scaffold1099 |
31996 |
32432 |
+ |
RS304 |
Unspecified |
| scaffold1099 |
32133 |
32753 |
+ |
RS2048 |
Unspecified |
| scaffold1099 |
32826 |
33101 |
- |
RS5320 |
Unspecified |
| scaffold1099 |
33135 |
33182 |
+ |
A-rich |
Low_complexity |
| scaffold1099 |
33421 |
33466 |
+ |
A-rich |
Low_complexity |
| scaffold1099 |
33678 |
34635 |
- |
ATIS112A |
DNA/PIF-Harbinger |
| scaffold1099 |
34765 |
34814 |
+ |
GA-rich |
Low_complexity |
| scaffold1099 |
35239 |
35275 |
+ |
(AATAACA)n |
Simple_repeat |
| scaffold1099 |
36595 |
36652 |
+ |
A-rich |
Low_complexity |
| scaffold1099 |
37230 |
37266 |
+ |
(TACTTAA)n |
Simple_repeat |
| scaffold1099 |
37230 |
37381 |
+ |
(TACTTAA)n |
Simple_repeat |
| scaffold1099 |
37251 |
37381 |
+ |
RS8649 |
Unspecified |
| scaffold1099 |
37382 |
37472 |
+ |
RS9465 |
Unspecified |
| scaffold1099 |
37429 |
37602 |
+ |
RS1155 |
Unspecified |
| scaffold1099 |
37733 |
37755 |
+ |
(T)n |
Simple_repeat |
| scaffold1099 |
37989 |
38196 |
+ |
RS369 |
Unspecified |
| scaffold1099 |
41411 |
41917 |
- |
PL166 |
Unspecified |
| scaffold1099 |
41905 |
43287 |
- |
Gypsy-78-I_ZM |
LTR/Gypsy |
| scaffold1099 |
43510 |
43526 |
+ |
(T)n |
Simple_repeat |
| scaffold1099 |
44604 |
45998 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1099 |
48245 |
49828 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold1099 |
48267 |
49600 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold1099 |
49890 |
51002 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold1099 |
49903 |
49998 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold1099 |
50103 |
50200 |
- |
Gypsy-54_GM-I |
LTR/Gypsy |
| scaffold1099 |
50292 |
50353 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold1099 |
50586 |
50606 |
+ |
(CTT)n |
Simple_repeat |
| scaffold1099 |
51488 |
51826 |
+ |
PL239 |
Unspecified |
| scaffold1099 |
52264 |
52319 |
+ |
(TATAACA)n |
Simple_repeat |
| scaffold1099 |
53585 |
53659 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold1099 |
53663 |
53809 |
+ |
(TATATT)n |
Simple_repeat |
| scaffold1099 |
54365 |
54424 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold1099 |
54700 |
54792 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold1099 |
55051 |
55124 |
+ |
(AACAT)n |
Simple_repeat |
| scaffold1099 |
55166 |
55218 |
+ |
(TAT)n |
Simple_repeat |
| scaffold1099 |
56398 |
56484 |
+ |
A-rich |
Low_complexity |
| scaffold1099 |
56510 |
57893 |
- |
Gypsy-7_CP-I |
LTR/Gypsy |
| scaffold1099 |
58113 |
59475 |
- |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold1099 |
59675 |
59770 |
- |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold1099 |
59884 |
59980 |
- |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold1099 |
60059 |
60135 |
- |
Gypsy-137_SBi-I |
LTR/Gypsy |
| scaffold1099 |
61670 |
61721 |
+ |
(AATT)n |
Simple_repeat |
| scaffold1099 |
83654 |
84283 |
- |
RIRE1_I-int |
LTR/Copia |