scaffold11098 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold11098 |
1 |
394 |
+ |
PL872 |
Unspecified |
| scaffold11098 |
393 |
988 |
- |
RS215 |
Unspecified |
| scaffold11098 |
1577 |
2752 |
- |
RS5561 |
Unspecified |
| scaffold11098 |
3114 |
3168 |
+ |
(TTT)n |
Simple_repeat |
| scaffold11098 |
3169 |
3200 |
+ |
(TTA)n |
Simple_repeat |
| scaffold11098 |
3201 |
3221 |
+ |
(TTT)n |
Simple_repeat |
| scaffold11098 |
3463 |
3497 |
+ |
(TTA)n |
Simple_repeat |
| scaffold11098 |
3535 |
3709 |
+ |
RS311 |
Unspecified |
| scaffold11098 |
4385 |
4518 |
- |
PL727 |
Unspecified |
| scaffold11098 |
4966 |
5013 |
+ |
(GAAGAT)n |
Simple_repeat |
| scaffold11098 |
5391 |
5856 |
+ |
RS2034 |
Unspecified |
| scaffold11098 |
6196 |
6212 |
+ |
(T)n |
Simple_repeat |
| scaffold11098 |
6605 |
8007 |
+ |
RS254 |
Unspecified |
| scaffold11098 |
6699 |
6750 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
7621 |
7704 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold11098 |
7728 |
7773 |
+ |
RS18 |
Unspecified |
| scaffold11098 |
7878 |
7913 |
+ |
(GACTCTT)n |
Simple_repeat |
| scaffold11098 |
8273 |
8440 |
- |
RS873 |
Unspecified |
| scaffold11098 |
8438 |
9000 |
+ |
PL503 |
Unspecified |
| scaffold11098 |
8989 |
9080 |
- |
RS873 |
Unspecified |
| scaffold11098 |
9081 |
9180 |
+ |
PL622 |
Unspecified |
| scaffold11098 |
9238 |
9399 |
+ |
Ogre-PT2_LTR |
LTR/Gypsy |
| scaffold11098 |
9689 |
9764 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold11098 |
9788 |
9854 |
- |
RS29 |
Unspecified |
| scaffold11098 |
10201 |
10344 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold11098 |
10888 |
10977 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold11098 |
12370 |
12400 |
+ |
(TAC)n |
Simple_repeat |
| scaffold11098 |
12455 |
12557 |
+ |
RS79 |
Unspecified |
| scaffold11098 |
12654 |
12954 |
+ |
RS2780 |
Unspecified |
| scaffold11098 |
12961 |
13037 |
+ |
RS79 |
Unspecified |
| scaffold11098 |
13000 |
13163 |
+ |
RS79 |
Unspecified |
| scaffold11098 |
13396 |
13463 |
+ |
(AAT)n |
Simple_repeat |
| scaffold11098 |
14881 |
14913 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
15272 |
15327 |
+ |
(TCT)n |
Simple_repeat |
| scaffold11098 |
15606 |
16034 |
+ |
RS35 |
Unspecified |
| scaffold11098 |
17661 |
17687 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold11098 |
18640 |
18693 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold11098 |
19095 |
19623 |
+ |
RS922 |
Unspecified |
| scaffold11098 |
19625 |
19711 |
- |
PL456 |
Unspecified |
| scaffold11098 |
19712 |
19787 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold11098 |
19882 |
20125 |
+ |
RS16888 |
Unspecified |
| scaffold11098 |
20142 |
20165 |
+ |
(CTTT)n |
Simple_repeat |
| scaffold11098 |
20430 |
21154 |
+ |
RS1560 |
Unspecified |
| scaffold11098 |
21197 |
21221 |
+ |
(AG)n |
Simple_repeat |
| scaffold11098 |
21556 |
21942 |
- |
RS52 |
Unspecified |
| scaffold11098 |
22328 |
22508 |
+ |
RS13799 |
Unspecified |
| scaffold11098 |
23306 |
23335 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold11098 |
23824 |
23870 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold11098 |
24124 |
24173 |
+ |
(ATCC)n |
Simple_repeat |
| scaffold11098 |
24614 |
24683 |
- |
RS29 |
Unspecified |
| scaffold11098 |
24775 |
24797 |
+ |
(AGGT)n |
Simple_repeat |
| scaffold11098 |
24921 |
24944 |
+ |
(T)n |
Simple_repeat |
| scaffold11098 |
25150 |
25178 |
+ |
(T)n |
Simple_repeat |
| scaffold11098 |
25468 |
25555 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold11098 |
25937 |
25978 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold11098 |
26112 |
26148 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold11098 |
26620 |
26685 |
+ |
(GTGAA)n |
Simple_repeat |
| scaffold11098 |
30980 |
31010 |
+ |
TRC1 |
DNA/PIF-Harbinger |
| scaffold11098 |
31020 |
31067 |
- |
RS18371 |
Unspecified |
| scaffold11098 |
31865 |
31902 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold11098 |
32049 |
32150 |
- |
RS1334 |
Unspecified |
| scaffold11098 |
32286 |
32377 |
- |
LT1_EPa |
LTR? |
| scaffold11098 |
32565 |
32622 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold11098 |
33836 |
33878 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold11098 |
34404 |
34487 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
34574 |
34654 |
- |
RS2496 |
Unspecified |
| scaffold11098 |
35566 |
35593 |
+ |
(T)n |
Simple_repeat |
| scaffold11098 |
35689 |
35704 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold11098 |
35705 |
35736 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
35828 |
35846 |
+ |
(CTT)n |
Simple_repeat |
| scaffold11098 |
36452 |
36522 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold11098 |
38936 |
38980 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
41554 |
41588 |
+ |
(CATG)n |
Simple_repeat |
| scaffold11098 |
43028 |
43054 |
+ |
(ACCCG)n |
Simple_repeat |
| scaffold11098 |
44399 |
44453 |
+ |
GA-rich |
Low_complexity |
| scaffold11098 |
44947 |
44978 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
45204 |
45272 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold11098 |
46317 |
46378 |
+ |
(CATTAATA)n |
Simple_repeat |
| scaffold11098 |
46626 |
46931 |
- |
RS9490 |
Unspecified |
| scaffold11098 |
47191 |
47372 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
47305 |
47372 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
47537 |
47655 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold11098 |
47684 |
47741 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
49011 |
49087 |
+ |
(TTA)n |
Simple_repeat |
| scaffold11098 |
49088 |
49146 |
+ |
(TTG)n |
Simple_repeat |
| scaffold11098 |
49147 |
49174 |
+ |
(TTA)n |
Simple_repeat |
| scaffold11098 |
49809 |
49869 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold11098 |
50289 |
50374 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold11098 |
50452 |
50500 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
50741 |
50922 |
- |
RS5 |
Unspecified |
| scaffold11098 |
50959 |
51113 |
- |
RS7290 |
Unspecified |
| scaffold11098 |
51095 |
51237 |
+ |
RS549 |
Unspecified |
| scaffold11098 |
51701 |
51730 |
+ |
(GTCGT)n |
Simple_repeat |
| scaffold11098 |
52477 |
52619 |
- |
RS1272 |
Unspecified |
| scaffold11098 |
52621 |
52673 |
+ |
(ATCTT)n |
Simple_repeat |
| scaffold11098 |
52839 |
52890 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
53015 |
53039 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
53210 |
53295 |
+ |
Copia-102_GM-LTR |
LTR/Copia |
| scaffold11098 |
53442 |
53538 |
+ |
RS4505 |
Unspecified |
| scaffold11098 |
53653 |
53896 |
+ |
RS16888 |
Unspecified |
| scaffold11098 |
59519 |
59558 |
+ |
(GTCGTG)n |
Simple_repeat |
| scaffold11098 |
60855 |
60871 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
61111 |
61217 |
+ |
RS11593 |
Unspecified |
| scaffold11098 |
61302 |
61355 |
- |
PL269 |
Unspecified |
| scaffold11098 |
61855 |
62074 |
+ |
RS586 |
Unspecified |
| scaffold11098 |
62339 |
62457 |
- |
RS214 |
Unspecified |
| scaffold11098 |
63321 |
63477 |
+ |
RS172 |
Unspecified |
| scaffold11098 |
63623 |
63744 |
- |
RS223 |
Unspecified |
| scaffold11098 |
63767 |
63803 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold11098 |
64166 |
64191 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
64280 |
64507 |
+ |
RS16817 |
Unspecified |
| scaffold11098 |
64557 |
64656 |
- |
RS15024 |
Unspecified |
| scaffold11098 |
64663 |
64947 |
- |
RS7373 |
Unspecified |
| scaffold11098 |
65519 |
65620 |
- |
RS11514 |
Unspecified |
| scaffold11098 |
66085 |
66125 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold11098 |
66367 |
66529 |
- |
RS370 |
Unspecified |
| scaffold11098 |
68261 |
68316 |
+ |
RS29 |
Unspecified |
| scaffold11098 |
68485 |
68509 |
+ |
(T)n |
Simple_repeat |
| scaffold11098 |
69626 |
69906 |
+ |
RS10856 |
Unspecified |
| scaffold11098 |
70114 |
70151 |
+ |
(TCTT)n |
Simple_repeat |
| scaffold11098 |
70366 |
70489 |
+ |
RS3889 |
Unspecified |
| scaffold11098 |
70605 |
70709 |
- |
RS1868 |
Unspecified |
| scaffold11098 |
70631 |
71024 |
+ |
RS4359 |
Unspecified |
| scaffold11098 |
71013 |
71462 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold11098 |
72628 |
73043 |
- |
RS3974 |
Unspecified |
| scaffold11098 |
72873 |
73587 |
+ |
RS516 |
Unspecified |
| scaffold11098 |
74174 |
74259 |
+ |
(TA)n |
Simple_repeat |
| scaffold11098 |
75050 |
75083 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
75462 |
75808 |
- |
RS2492 |
Unspecified |
| scaffold11098 |
79085 |
79543 |
- |
RS10902 |
Unspecified |
| scaffold11098 |
79423 |
79581 |
- |
RS11686 |
Unspecified |
| scaffold11098 |
80124 |
80160 |
+ |
(AATTCA)n |
Simple_repeat |
| scaffold11098 |
80260 |
80385 |
+ |
RS831 |
Unspecified |
| scaffold11098 |
80280 |
80435 |
+ |
RS1111 |
Unspecified |
| scaffold11098 |
81317 |
81375 |
+ |
Copia-15_Mad-I |
LTR/Copia |
| scaffold11098 |
82793 |
82811 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
82995 |
83058 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
86091 |
86107 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
86519 |
86543 |
+ |
(GAGTGT)n |
Simple_repeat |
| scaffold11098 |
87056 |
87124 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold11098 |
87165 |
87295 |
- |
RS223 |
Unspecified |
| scaffold11098 |
87497 |
87553 |
+ |
(AGCCC)n |
Simple_repeat |
| scaffold11098 |
87646 |
87669 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
87758 |
87985 |
+ |
RS16817 |
Unspecified |
| scaffold11098 |
88035 |
88134 |
- |
RS15024 |
Unspecified |
| scaffold11098 |
88141 |
88425 |
- |
RS7373 |
Unspecified |
| scaffold11098 |
88993 |
89094 |
- |
RS11514 |
Unspecified |
| scaffold11098 |
89559 |
89599 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold11098 |
89613 |
89730 |
- |
PL400 |
Unspecified |
| scaffold11098 |
89728 |
89801 |
- |
RS628 |
Unspecified |
| scaffold11098 |
89852 |
89913 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
90165 |
90208 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
90220 |
90385 |
+ |
RS8137 |
Unspecified |
| scaffold11098 |
90474 |
90508 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
90698 |
90874 |
+ |
RS18243 |
Unspecified |
| scaffold11098 |
90920 |
91313 |
+ |
RS29 |
Unspecified |
| scaffold11098 |
91479 |
91507 |
+ |
(T)n |
Simple_repeat |
| scaffold11098 |
93095 |
93375 |
+ |
RS10856 |
Unspecified |
| scaffold11098 |
93409 |
93578 |
- |
RS5393 |
Unspecified |
| scaffold11098 |
94474 |
94644 |
- |
RS11135 |
Unspecified |
| scaffold11098 |
94539 |
94876 |
+ |
RS2492 |
Unspecified |
| scaffold11098 |
95518 |
95576 |
+ |
(TAA)n |
Simple_repeat |
| scaffold11098 |
95624 |
95670 |
+ |
(TAATATTA)n |
Simple_repeat |
| scaffold11098 |
95870 |
95923 |
+ |
(TTATTTA)n |
Simple_repeat |
| scaffold11098 |
96824 |
96868 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
97226 |
97246 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold11098 |
97257 |
97602 |
- |
RS2492 |
Unspecified |
| scaffold11098 |
102567 |
102637 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold11098 |
102717 |
102798 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
102855 |
102897 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
103038 |
103130 |
+ |
G-rich |
Low_complexity |
| scaffold11098 |
103322 |
103365 |
+ |
(GATTAC)n |
Simple_repeat |
| scaffold11098 |
103364 |
103641 |
- |
RS548 |
Unspecified |
| scaffold11098 |
103727 |
103761 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold11098 |
104297 |
104760 |
- |
RS846 |
Unspecified |
| scaffold11098 |
106347 |
106610 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold11098 |
106437 |
106610 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold11098 |
107222 |
107556 |
- |
RS2492 |
Unspecified |
| scaffold11098 |
108932 |
109041 |
+ |
RS10608 |
Unspecified |
| scaffold11098 |
109116 |
109155 |
- |
RS17416 |
Unspecified |
| scaffold11098 |
109197 |
109451 |
+ |
RS11135 |
Unspecified |
| scaffold11098 |
110096 |
110335 |
- |
RS10856 |
Unspecified |
| scaffold11098 |
110291 |
110470 |
+ |
RS3567 |
Unspecified |
| scaffold11098 |
111399 |
111495 |
+ |
RS18155 |
Unspecified |
| scaffold11098 |
111620 |
111748 |
+ |
RS13624 |
Unspecified |
| scaffold11098 |
111657 |
111767 |
- |
RS18330 |
Unspecified |
| scaffold11098 |
111728 |
112284 |
+ |
RS17416 |
Unspecified |
| scaffold11098 |
112346 |
112372 |
+ |
A-rich |
Low_complexity |
| scaffold11098 |
113212 |
113233 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
114020 |
114142 |
- |
RS11135 |
Unspecified |
| scaffold11098 |
114040 |
114367 |
+ |
RS2492 |
Unspecified |
| scaffold11098 |
115356 |
115377 |
+ |
(T)n |
Simple_repeat |
| scaffold11098 |
115769 |
115867 |
+ |
RS3966 |
Unspecified |
| scaffold11098 |
115810 |
115875 |
+ |
RS3380 |
Unspecified |
| scaffold11098 |
115838 |
115897 |
+ |
RS3966 |
Unspecified |
| scaffold11098 |
115842 |
115912 |
+ |
RS3380 |
Unspecified |
| scaffold11098 |
117089 |
117435 |
- |
RS2492 |
Unspecified |
| scaffold11098 |
117333 |
117452 |
+ |
RS11135 |
Unspecified |
| scaffold11098 |
120716 |
120819 |
+ |
RS3567 |
Unspecified |
| scaffold11098 |
121077 |
121110 |
+ |
(CGACC)n |
Simple_repeat |
| scaffold11098 |
121153 |
121236 |
- |
HAT-10_Mad |
DNA/hAT-Ac |
| scaffold11098 |
121366 |
121498 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold11098 |
121744 |
121854 |
+ |
Copia-5_CP-I |
LTR/Copia |
| scaffold11098 |
121784 |
121883 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold11098 |
122004 |
122121 |
+ |
RS47 |
Unspecified |
| scaffold11098 |
122120 |
122377 |
- |
RS237 |
Unspecified |
| scaffold11098 |
122446 |
122511 |
- |
STOWAWAY2_ZM |
DNA/TcMar-Stowaway |
| scaffold11098 |
123100 |
123175 |
+ |
RS9510 |
Unspecified |
| scaffold11098 |
123813 |
123864 |
+ |
(ATA)n |
Simple_repeat |
| scaffold11098 |
123974 |
124014 |
+ |
(CCAACAC)n |
Simple_repeat |
| scaffold11098 |
124417 |
124463 |
- |
PL375 |
Unspecified |
| scaffold11098 |
124505 |
124549 |
+ |
(A)n |
Simple_repeat |
| scaffold11098 |
124910 |
125256 |
- |
RS2492 |
Unspecified |
| scaffold11098 |
125154 |
125273 |
+ |
RS11135 |
Unspecified |
| scaffold11098 |
126493 |
126541 |
+ |
Copia-61_VV-I |
LTR/Copia |
| scaffold11098 |
126809 |
126918 |
+ |
RS10608 |
Unspecified |
| scaffold11098 |
126977 |
127016 |
- |
RS17416 |
Unspecified |
| scaffold11098 |
127077 |
127321 |
+ |
RS11135 |
Unspecified |
| scaffold11098 |
127880 |
127989 |
+ |
RS10608 |
Unspecified |
| scaffold11098 |
128064 |
128103 |
- |
RS17416 |
Unspecified |
| scaffold11098 |
128145 |
128399 |
+ |
RS11135 |
Unspecified |
| scaffold11098 |
129044 |
129283 |
- |
RS10856 |
Unspecified |
| scaffold11098 |
129239 |
129417 |
+ |
RS3567 |
Unspecified |
| scaffold11098 |
130295 |
130399 |
+ |
RS18155 |
Unspecified |
| scaffold11098 |
130559 |
130686 |
+ |
RS13624 |
Unspecified |
| scaffold11098 |
130595 |
130705 |
- |
RS18330 |
Unspecified |
| scaffold11098 |
130666 |
131176 |
+ |
RS17416 |
Unspecified |
| scaffold11098 |
131223 |
131353 |
- |
RS17416 |
Unspecified |
| scaffold11098 |
131315 |
131589 |
+ |
RS18330 |
Unspecified |