scaffold11475 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold11475 |
416 |
1274 |
+ |
Gypsy-20_BRa-I |
LTR/Gypsy |
| scaffold11475 |
2018 |
2109 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold11475 |
3562 |
3749 |
- |
RS5899 |
Unspecified |
| scaffold11475 |
3816 |
4951 |
+ |
RS15 |
Unspecified |
| scaffold11475 |
6895 |
7001 |
+ |
PL812 |
Unspecified |
| scaffold11475 |
7526 |
7567 |
+ |
(CCTCTT)n |
Simple_repeat |
| scaffold11475 |
9539 |
9771 |
- |
Copia-30_ST-I |
LTR/Copia |
| scaffold11475 |
10598 |
10703 |
- |
Copia-30_ST-I |
LTR/Copia |
| scaffold11475 |
10852 |
11583 |
+ |
PL21 |
Unspecified |
| scaffold11475 |
11641 |
11715 |
+ |
RS6306 |
Unspecified |
| scaffold11475 |
11764 |
11785 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
11811 |
11890 |
+ |
RS210 |
Unspecified |
| scaffold11475 |
11874 |
11977 |
+ |
PL436 |
Unspecified |
| scaffold11475 |
11883 |
11991 |
+ |
PL754 |
Unspecified |
| scaffold11475 |
11889 |
11982 |
+ |
RS16382 |
Unspecified |
| scaffold11475 |
12003 |
12171 |
+ |
RS210 |
Unspecified |
| scaffold11475 |
12574 |
12637 |
+ |
RS5163 |
Unspecified |
| scaffold11475 |
13638 |
13980 |
+ |
RS790 |
Unspecified |
| scaffold11475 |
14554 |
14672 |
+ |
RS1204 |
Unspecified |
| scaffold11475 |
14692 |
15727 |
+ |
RS3148 |
Unspecified |
| scaffold11475 |
16033 |
16123 |
- |
RS4014 |
Unspecified |
| scaffold11475 |
16033 |
16107 |
- |
RS1401 |
Unspecified |
| scaffold11475 |
16197 |
16243 |
+ |
GA-rich |
Low_complexity |
| scaffold11475 |
16444 |
16469 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
16713 |
16738 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
17275 |
17330 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold11475 |
17304 |
17331 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold11475 |
17461 |
17479 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
17709 |
17941 |
+ |
(ACC)n |
Simple_repeat |
| scaffold11475 |
18162 |
18185 |
+ |
(AAG)n |
Simple_repeat |
| scaffold11475 |
18667 |
18700 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
19388 |
19437 |
+ |
(CCA)n |
Simple_repeat |
| scaffold11475 |
21085 |
21154 |
+ |
(TT)n |
Simple_repeat |
| scaffold11475 |
21809 |
21888 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
22070 |
22098 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
22805 |
22855 |
+ |
(ATA)n |
Simple_repeat |
| scaffold11475 |
26972 |
27125 |
+ |
(AACAGC)n |
Simple_repeat |
| scaffold11475 |
27870 |
28652 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
28745 |
29181 |
- |
RS13107 |
Unspecified |
| scaffold11475 |
29215 |
30167 |
- |
RS12113 |
Unspecified |
| scaffold11475 |
30309 |
30513 |
- |
RS11741 |
Unspecified |
| scaffold11475 |
31441 |
31986 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold11475 |
32192 |
33794 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
34377 |
34425 |
+ |
(ATTATAA)n |
Simple_repeat |
| scaffold11475 |
35542 |
37083 |
+ |
RS260 |
Unspecified |
| scaffold11475 |
37183 |
37728 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold11475 |
37306 |
37740 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold11475 |
37651 |
37678 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
37824 |
38229 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold11475 |
38225 |
38380 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold11475 |
41532 |
42153 |
+ |
RS260 |
Unspecified |
| scaffold11475 |
42152 |
42354 |
+ |
RS8540 |
Unspecified |
| scaffold11475 |
42190 |
42380 |
+ |
RS15584 |
Unspecified |
| scaffold11475 |
42411 |
43173 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
43447 |
43791 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
43517 |
43791 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
44123 |
44151 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
45102 |
45311 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold11475 |
45104 |
45268 |
- |
Copia-82_BRa-I |
LTR/Copia |
| scaffold11475 |
46057 |
46092 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
46328 |
46361 |
+ |
(TTTACT)n |
Simple_repeat |
| scaffold11475 |
46465 |
47009 |
+ |
PL637 |
Unspecified |
| scaffold11475 |
47516 |
47570 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold11475 |
47725 |
47785 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
47843 |
48062 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold11475 |
48125 |
48163 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
50307 |
50490 |
+ |
RS9753 |
Unspecified |
| scaffold11475 |
52676 |
52697 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold11475 |
53621 |
53660 |
+ |
(AACAACT)n |
Simple_repeat |
| scaffold11475 |
54897 |
54923 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
55100 |
55283 |
+ |
RS9753 |
Unspecified |
| scaffold11475 |
57228 |
57280 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold11475 |
57915 |
57975 |
- |
RS715 |
Unspecified |
| scaffold11475 |
61318 |
61350 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold11475 |
64299 |
64358 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
66077 |
66097 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
66763 |
66944 |
+ |
RS9753 |
Unspecified |
| scaffold11475 |
69591 |
69622 |
+ |
(TGC)n |
Simple_repeat |
| scaffold11475 |
70961 |
70996 |
+ |
(ACCCG)n |
Simple_repeat |
| scaffold11475 |
71201 |
71322 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold11475 |
73138 |
73161 |
+ |
(TTG)n |
Simple_repeat |
| scaffold11475 |
75344 |
75801 |
- |
PL352 |
Unspecified |
| scaffold11475 |
76656 |
76683 |
+ |
(CTCCT)n |
Simple_repeat |
| scaffold11475 |
76689 |
76720 |
+ |
(CT)n |
Simple_repeat |
| scaffold11475 |
76781 |
76811 |
+ |
(TCT)n |
Simple_repeat |
| scaffold11475 |
76908 |
76992 |
+ |
(GTT)n |
Simple_repeat |
| scaffold11475 |
76976 |
77006 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold11475 |
77649 |
77676 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold11475 |
77778 |
77808 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
77989 |
78012 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold11475 |
78141 |
78192 |
+ |
(ATTTTTC)n |
Simple_repeat |
| scaffold11475 |
79909 |
79942 |
+ |
(TATC)n |
Simple_repeat |
| scaffold11475 |
80011 |
80076 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold11475 |
80635 |
80681 |
+ |
(TTATTA)n |
Simple_repeat |
| scaffold11475 |
81678 |
81786 |
- |
RS998 |
Unspecified |
| scaffold11475 |
81760 |
81881 |
- |
RS15184 |
Unspecified |
| scaffold11475 |
81948 |
82095 |
+ |
(AT)n |
Simple_repeat |
| scaffold11475 |
82096 |
82337 |
- |
RS1663 |
Unspecified |
| scaffold11475 |
82859 |
82878 |
+ |
(TA)n |
Simple_repeat |
| scaffold11475 |
83423 |
83484 |
- |
RS1854 |
Unspecified |
| scaffold11475 |
85096 |
85472 |
- |
RS614 |
Unspecified |
| scaffold11475 |
85471 |
85590 |
+ |
RS1854 |
Unspecified |
| scaffold11475 |
86571 |
86637 |
+ |
(ATT)n |
Simple_repeat |
| scaffold11475 |
86668 |
86753 |
+ |
(ATA)n |
Simple_repeat |
| scaffold11475 |
87020 |
87134 |
- |
RS17927 |
Unspecified |
| scaffold11475 |
88469 |
88780 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold11475 |
89011 |
90518 |
+ |
Copia-30-I_VV |
LTR/Copia |
| scaffold11475 |
90536 |
90586 |
+ |
(TA)n |
Simple_repeat |
| scaffold11475 |
90788 |
90946 |
- |
PL101 |
Unspecified |
| scaffold11475 |
91628 |
91706 |
+ |
RS285 |
Unspecified |
| scaffold11475 |
92120 |
92155 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
92161 |
92515 |
- |
RS8 |
Unspecified |
| scaffold11475 |
92516 |
92578 |
+ |
GA-rich |
Low_complexity |
| scaffold11475 |
92968 |
93145 |
+ |
RS14475 |
Unspecified |
| scaffold11475 |
93228 |
93279 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
93458 |
93617 |
- |
RS5104 |
Unspecified |
| scaffold11475 |
94039 |
94069 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
95619 |
95689 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
95769 |
95817 |
+ |
(GTA)n |
Simple_repeat |
| scaffold11475 |
96210 |
96241 |
+ |
(CATTTT)n |
Simple_repeat |
| scaffold11475 |
97002 |
97023 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
97447 |
97508 |
+ |
(TTTTCTGAAG)n |
Simple_repeat |
| scaffold11475 |
98687 |
98852 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold11475 |
100231 |
100330 |
+ |
(ATT)n |
Simple_repeat |
| scaffold11475 |
100331 |
100514 |
+ |
(TAT)n |
Simple_repeat |
| scaffold11475 |
100515 |
100531 |
+ |
(ATT)n |
Simple_repeat |
| scaffold11475 |
100538 |
100673 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold11475 |
100538 |
100633 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold11475 |
100607 |
100673 |
- |
RS5732 |
Unspecified |
| scaffold11475 |
100919 |
101026 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold11475 |
101804 |
101857 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
102467 |
102740 |
+ |
RS736 |
Unspecified |
| scaffold11475 |
103153 |
103219 |
+ |
(TCCTT)n |
Simple_repeat |
| scaffold11475 |
103311 |
103516 |
- |
RS5968 |
Unspecified |
| scaffold11475 |
103510 |
103608 |
+ |
RS4475 |
Unspecified |
| scaffold11475 |
103512 |
103634 |
- |
RS16382 |
Unspecified |
| scaffold11475 |
104531 |
104901 |
- |
RS512 |
Unspecified |
| scaffold11475 |
106212 |
106230 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
106423 |
106460 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold11475 |
106665 |
106730 |
+ |
(TTC)n |
Simple_repeat |
| scaffold11475 |
107091 |
107231 |
- |
RS337 |
Unspecified |
| scaffold11475 |
111953 |
112034 |
+ |
ATCopia27_I-int |
LTR/Copia |
| scaffold11475 |
112353 |
112569 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold11475 |
112747 |
112881 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
112831 |
112881 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
113755 |
113937 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold11475 |
114234 |
114596 |
- |
RS8 |
Unspecified |
| scaffold11475 |
114999 |
115060 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold11475 |
115127 |
115158 |
+ |
(ATGTTG)n |
Simple_repeat |
| scaffold11475 |
117600 |
117617 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
118176 |
118213 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold11475 |
119117 |
119372 |
- |
RS338 |
Unspecified |
| scaffold11475 |
119371 |
119387 |
+ |
(C)n |
Simple_repeat |
| scaffold11475 |
120119 |
120188 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
121088 |
121177 |
+ |
(CGTATA)n |
Simple_repeat |
| scaffold11475 |
121842 |
121870 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
121871 |
121903 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold11475 |
121953 |
122429 |
+ |
PL350 |
Unspecified |
| scaffold11475 |
122444 |
123093 |
+ |
PL919 |
Unspecified |
| scaffold11475 |
123240 |
123272 |
+ |
(AGATGA)n |
Simple_repeat |
| scaffold11475 |
123273 |
123303 |
+ |
GA-rich |
Low_complexity |
| scaffold11475 |
123404 |
123496 |
+ |
(TTG)n |
Simple_repeat |
| scaffold11475 |
123777 |
123817 |
+ |
(AAAATA)n |
Simple_repeat |
| scaffold11475 |
124997 |
125384 |
+ |
RS1699 |
Unspecified |
| scaffold11475 |
125403 |
125855 |
+ |
PL352 |
Unspecified |
| scaffold11475 |
125855 |
126171 |
+ |
RS600 |
Unspecified |
| scaffold11475 |
126329 |
126348 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
128845 |
129504 |
+ |
RS259 |
Unspecified |
| scaffold11475 |
130618 |
131167 |
- |
RS30 |
Unspecified |
| scaffold11475 |
130733 |
131612 |
+ |
PL532 |
Unspecified |
| scaffold11475 |
131685 |
131721 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold11475 |
131718 |
131761 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
131804 |
131868 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
133022 |
133051 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
135064 |
135108 |
+ |
(ATGAT)n |
Simple_repeat |
| scaffold11475 |
135653 |
136844 |
+ |
Copia-101_Mad-I |
LTR/Copia |
| scaffold11475 |
137314 |
138574 |
+ |
Copia-101_Mad-I |
LTR/Copia |
| scaffold11475 |
138599 |
138872 |
+ |
RS247 |
Unspecified |
| scaffold11475 |
138956 |
139044 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
139402 |
140364 |
+ |
PL808 |
Unspecified |
| scaffold11475 |
140365 |
140870 |
+ |
RS1275 |
Unspecified |
| scaffold11475 |
141724 |
141761 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
142617 |
142642 |
+ |
(AT)n |
Simple_repeat |
| scaffold11475 |
143895 |
143965 |
+ |
(ATT)n |
Simple_repeat |
| scaffold11475 |
144360 |
144399 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold11475 |
144775 |
144806 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold11475 |
145180 |
145255 |
+ |
(TTTTTAA)n |
Simple_repeat |
| scaffold11475 |
145410 |
145453 |
+ |
(TAATTTA)n |
Simple_repeat |
| scaffold11475 |
147010 |
147027 |
+ |
(TTC)n |
Simple_repeat |
| scaffold11475 |
147192 |
147223 |
+ |
(AG)n |
Simple_repeat |
| scaffold11475 |
148041 |
148075 |
+ |
(CGATAC)n |
Simple_repeat |
| scaffold11475 |
148177 |
148218 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
148279 |
148328 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold11475 |
149118 |
149165 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
149256 |
149290 |
+ |
(AT)n |
Simple_repeat |
| scaffold11475 |
149506 |
149535 |
+ |
(TA)n |
Simple_repeat |
| scaffold11475 |
149713 |
149795 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
150903 |
150933 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
152393 |
152449 |
+ |
(ATTATG)n |
Simple_repeat |
| scaffold11475 |
152442 |
152466 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
155415 |
155453 |
+ |
(ATCTTC)n |
Simple_repeat |
| scaffold11475 |
159813 |
159874 |
+ |
G-rich |
Low_complexity |
| scaffold11475 |
160416 |
160440 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
160479 |
160511 |
+ |
(TGGGC)n |
Simple_repeat |
| scaffold11475 |
160567 |
160646 |
+ |
G-rich |
Low_complexity |
| scaffold11475 |
160823 |
160842 |
+ |
(TAC)n |
Simple_repeat |
| scaffold11475 |
161010 |
161033 |
+ |
(TGAA)n |
Simple_repeat |
| scaffold11475 |
161101 |
161155 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
161283 |
161317 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
161376 |
161421 |
+ |
(TTTTTAA)n |
Simple_repeat |
| scaffold11475 |
161451 |
161621 |
+ |
PL580 |
Unspecified |
| scaffold11475 |
161667 |
161694 |
+ |
(CGGTGC)n |
Simple_repeat |
| scaffold11475 |
161778 |
161815 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold11475 |
161828 |
161924 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold11475 |
162029 |
162070 |
+ |
GA-rich |
Low_complexity |
| scaffold11475 |
162147 |
162389 |
+ |
PL281 |
Unspecified |
| scaffold11475 |
162693 |
162832 |
+ |
RS2846 |
Unspecified |
| scaffold11475 |
162944 |
162983 |
+ |
(TTGTATT)n |
Simple_repeat |
| scaffold11475 |
163134 |
163480 |
- |
RS4503 |
Unspecified |
| scaffold11475 |
163469 |
163595 |
- |
RS13214 |
Unspecified |
| scaffold11475 |
163894 |
164041 |
- |
RS5119 |
Unspecified |
| scaffold11475 |
164044 |
164338 |
+ |
RS305 |
Unspecified |
| scaffold11475 |
164311 |
164688 |
+ |
RS956 |
Unspecified |
| scaffold11475 |
164725 |
164834 |
- |
RS6320 |
Unspecified |
| scaffold11475 |
164735 |
164828 |
+ |
RS16382 |
Unspecified |
| scaffold11475 |
164844 |
164887 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
165111 |
165204 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold11475 |
165617 |
165639 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
166543 |
166684 |
+ |
PL560 |
Unspecified |
| scaffold11475 |
166548 |
166672 |
+ |
RS915 |
Unspecified |
| scaffold11475 |
166841 |
166870 |
+ |
(C)n |
Simple_repeat |
| scaffold11475 |
167128 |
167148 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
167149 |
167184 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
167412 |
167441 |
+ |
(TA)n |
Simple_repeat |
| scaffold11475 |
170155 |
170251 |
+ |
(TCT)n |
Simple_repeat |
| scaffold11475 |
170612 |
170715 |
+ |
RS4475 |
Unspecified |
| scaffold11475 |
171615 |
171670 |
+ |
(AGT)n |
Simple_repeat |
| scaffold11475 |
171692 |
171780 |
- |
RS9585 |
Unspecified |
| scaffold11475 |
172030 |
172092 |
+ |
(AATGTAT)n |
Simple_repeat |
| scaffold11475 |
172186 |
172227 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
172912 |
172984 |
+ |
(ATT)n |
Simple_repeat |
| scaffold11475 |
173322 |
173721 |
+ |
RS72 |
Unspecified |
| scaffold11475 |
173841 |
173965 |
+ |
RS10910 |
Unspecified |
| scaffold11475 |
174339 |
174536 |
- |
RS3394 |
Unspecified |
| scaffold11475 |
174639 |
174686 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
174837 |
175027 |
+ |
RS11317 |
Unspecified |
| scaffold11475 |
175051 |
175199 |
- |
RS15292 |
Unspecified |
| scaffold11475 |
175145 |
175342 |
- |
RS3394 |
Unspecified |
| scaffold11475 |
175344 |
175404 |
+ |
RS946 |
Unspecified |
| scaffold11475 |
175403 |
175598 |
+ |
PL560 |
Unspecified |
| scaffold11475 |
176180 |
176213 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
176402 |
176626 |
+ |
RS837 |
Unspecified |
| scaffold11475 |
177481 |
177635 |
- |
RS5090 |
Unspecified |
| scaffold11475 |
177851 |
178082 |
+ |
RS3651 |
Unspecified |
| scaffold11475 |
178169 |
178202 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
178602 |
178692 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold11475 |
179018 |
179057 |
+ |
(TCCCT)n |
Simple_repeat |
| scaffold11475 |
179073 |
179118 |
+ |
RS5090 |
Unspecified |
| scaffold11475 |
179760 |
179783 |
+ |
(TAC)n |
Simple_repeat |
| scaffold11475 |
181560 |
181615 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
181793 |
181816 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
181793 |
181980 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
181811 |
181980 |
- |
RS9068 |
Unspecified |
| scaffold11475 |
183563 |
183709 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold11475 |
183786 |
184139 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold11475 |
184409 |
184443 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold11475 |
184636 |
185424 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold11475 |
185949 |
186100 |
+ |
RS8128 |
Unspecified |
| scaffold11475 |
186193 |
186426 |
+ |
RS9068 |
Unspecified |
| scaffold11475 |
186428 |
186493 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
186624 |
186908 |
+ |
RS1095 |
Unspecified |
| scaffold11475 |
187066 |
187109 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
187451 |
187475 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
187626 |
187805 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold11475 |
187875 |
188090 |
+ |
RS476 |
Unspecified |
| scaffold11475 |
188687 |
188719 |
+ |
(GTA)n |
Simple_repeat |
| scaffold11475 |
188796 |
188830 |
+ |
(TCTGCT)n |
Simple_repeat |
| scaffold11475 |
188911 |
188952 |
+ |
(TTATTTAT)n |
Simple_repeat |
| scaffold11475 |
189135 |
189226 |
+ |
(AAGTTTTCTG)n |
Simple_repeat |
| scaffold11475 |
189237 |
189258 |
+ |
(ATT)n |
Simple_repeat |
| scaffold11475 |
189409 |
189455 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
190105 |
190227 |
- |
RS10294 |
Unspecified |
| scaffold11475 |
190493 |
190816 |
- |
RS10940 |
Unspecified |
| scaffold11475 |
192275 |
192430 |
- |
RS17860 |
Unspecified |
| scaffold11475 |
192471 |
192636 |
- |
RS1546 |
Unspecified |
| scaffold11475 |
193378 |
193522 |
- |
RS1089 |
Unspecified |
| scaffold11475 |
195331 |
195583 |
- |
RS13075 |
Unspecified |
| scaffold11475 |
196460 |
196575 |
+ |
RS4873 |
Unspecified |
| scaffold11475 |
196730 |
196798 |
+ |
(ACA)n |
Simple_repeat |
| scaffold11475 |
197067 |
197517 |
- |
RS1594 |
Unspecified |
| scaffold11475 |
197520 |
201149 |
- |
Copia-4_GM-I |
LTR/Copia |
| scaffold11475 |
201367 |
202018 |
- |
Copia-4_GM-I |
LTR/Copia |
| scaffold11475 |
202060 |
202391 |
- |
RS6798 |
Unspecified |
| scaffold11475 |
202416 |
202870 |
- |
RS1594 |
Unspecified |
| scaffold11475 |
204023 |
204116 |
+ |
RS4475 |
Unspecified |
| scaffold11475 |
204797 |
204914 |
- |
RS6705 |
Unspecified |
| scaffold11475 |
204927 |
206697 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
206903 |
208166 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
208479 |
208786 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
209262 |
210056 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold11475 |
210080 |
210488 |
- |
RS1280 |
Unspecified |
| scaffold11475 |
210684 |
210796 |
+ |
(CGGTTAA)n |
Simple_repeat |
| scaffold11475 |
211211 |
211360 |
+ |
(GTTAACC)n |
Simple_repeat |
| scaffold11475 |
212109 |
212178 |
- |
Sat-1_CPa |
Satellite |
| scaffold11475 |
212926 |
212983 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
213452 |
213500 |
+ |
(AATAATA)n |
Simple_repeat |
| scaffold11475 |
213861 |
213914 |
+ |
(TTA)n |
Simple_repeat |
| scaffold11475 |
214165 |
214217 |
+ |
(AT)n |
Simple_repeat |
| scaffold11475 |
215016 |
215145 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold11475 |
215144 |
215344 |
- |
RS82 |
Unspecified |
| scaffold11475 |
215411 |
215848 |
+ |
LINE1I_MT |
LINE/L1 |
| scaffold11475 |
218159 |
218196 |
+ |
(TTTCGT)n |
Simple_repeat |
| scaffold11475 |
218765 |
218791 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold11475 |
219415 |
219591 |
+ |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold11475 |
220040 |
220071 |
+ |
(CAACA)n |
Simple_repeat |
| scaffold11475 |
220105 |
220478 |
- |
RS1930 |
Unspecified |
| scaffold11475 |
220559 |
221047 |
- |
RS6060 |
Unspecified |
| scaffold11475 |
221243 |
221889 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold11475 |
222314 |
222383 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold11475 |
223812 |
223859 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold11475 |
224226 |
224275 |
+ |
(ACAAGT)n |
Simple_repeat |
| scaffold11475 |
224657 |
224688 |
+ |
(CTTTCG)n |
Simple_repeat |
| scaffold11475 |
227605 |
227651 |
+ |
(ATGTT)n |
Simple_repeat |
| scaffold11475 |
228124 |
228166 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold11475 |
228447 |
228898 |
+ |
GYPSHAN_I_MT-int |
LTR/Gypsy |
| scaffold11475 |
229353 |
229405 |
+ |
(ACA)n |
Simple_repeat |
| scaffold11475 |
229717 |
229750 |
+ |
GYPSHAN_I_MT-int |
LTR/Gypsy |
| scaffold11475 |
229995 |
230617 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold11475 |
230789 |
230827 |
- |
RS2023 |
Unspecified |
| scaffold11475 |
230979 |
231308 |
- |
PL137 |
Unspecified |
| scaffold11475 |
232348 |
233468 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold11475 |
233491 |
234634 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold11475 |
235305 |
235348 |
+ |
(TTCA)n |
Simple_repeat |
| scaffold11475 |
235734 |
235798 |
+ |
(TAGTT)n |
Simple_repeat |
| scaffold11475 |
236844 |
236882 |
+ |
(TGA)n |
Simple_repeat |
| scaffold11475 |
237463 |
237497 |
+ |
(GGTGGC)n |
Simple_repeat |
| scaffold11475 |
237678 |
237763 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold11475 |
238477 |
238567 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
240151 |
240197 |
+ |
(ATGTT)n |
Simple_repeat |
| scaffold11475 |
240860 |
240924 |
+ |
(TTATGTT)n |
Simple_repeat |
| scaffold11475 |
241501 |
241520 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
243512 |
243850 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold11475 |
243525 |
243840 |
- |
ATLINE1_7 |
LINE/L1 |
| scaffold11475 |
243844 |
244744 |
- |
PL647 |
Unspecified |
| scaffold11475 |
249279 |
249363 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold11475 |
251988 |
252095 |
+ |
(GCAACG)n |
Simple_repeat |
| scaffold11475 |
252089 |
253612 |
+ |
RS254 |
Unspecified |
| scaffold11475 |
254301 |
254421 |
+ |
RS254 |
Unspecified |
| scaffold11475 |
254493 |
254632 |
- |
L1-5_EPa |
LINE/L1 |
| scaffold11475 |
256148 |
256205 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold11475 |
256554 |
256618 |
+ |
(ATTATTA)n |
Simple_repeat |
| scaffold11475 |
256977 |
257141 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold11475 |
258700 |
258731 |
+ |
(ATA)n |
Simple_repeat |
| scaffold11475 |
259030 |
259072 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold11475 |
259885 |
259906 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
259975 |
260106 |
+ |
PL432 |
Unspecified |
| scaffold11475 |
260103 |
260177 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
260215 |
260512 |
- |
RS11122 |
Unspecified |
| scaffold11475 |
260588 |
260639 |
+ |
(TAA)n |
Simple_repeat |
| scaffold11475 |
261390 |
261813 |
+ |
PL580 |
Unspecified |
| scaffold11475 |
261405 |
261781 |
+ |
RS5402 |
Unspecified |
| scaffold11475 |
261848 |
261878 |
+ |
(TTTTTAT)n |
Simple_repeat |
| scaffold11475 |
261881 |
261964 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold11475 |
262087 |
262130 |
+ |
GA-rich |
Low_complexity |
| scaffold11475 |
262543 |
262572 |
+ |
(GTCAA)n |
Simple_repeat |
| scaffold11475 |
262785 |
262886 |
+ |
RS1332 |
Unspecified |
| scaffold11475 |
263384 |
263527 |
+ |
RS3580 |
Unspecified |
| scaffold11475 |
263414 |
263599 |
- |
RS725 |
Unspecified |
| scaffold11475 |
263507 |
263618 |
- |
RS1332 |
Unspecified |
| scaffold11475 |
263829 |
263845 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
264138 |
264251 |
+ |
RS203 |
Unspecified |
| scaffold11475 |
267487 |
267569 |
+ |
COP2_I_MT-int |
LTR/Copia |
| scaffold11475 |
267496 |
267584 |
+ |
ATGP11_LTR |
LTR/Gypsy |
| scaffold11475 |
267881 |
268097 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold11475 |
268985 |
269016 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold11475 |
269231 |
269280 |
+ |
(TTTAGAA)n |
Simple_repeat |
| scaffold11475 |
270469 |
271268 |
+ |
RS2778 |
Unspecified |
| scaffold11475 |
271455 |
271794 |
- |
RS132 |
Unspecified |
| scaffold11475 |
271776 |
271882 |
- |
RS17699 |
Unspecified |
| scaffold11475 |
271793 |
272062 |
+ |
RS1 |
Unspecified |
| scaffold11475 |
272271 |
272320 |
+ |
GA-rich |
Low_complexity |
| scaffold11475 |
272719 |
272776 |
+ |
OSCopia2_I-int |
LTR/Copia |
| scaffold11475 |
273050 |
273084 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold11475 |
274658 |
274684 |
+ |
(GGCCG)n |
Simple_repeat |
| scaffold11475 |
276920 |
276956 |
+ |
(TCC)n |
Simple_repeat |
| scaffold11475 |
279452 |
279487 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold11475 |
280058 |
280086 |
+ |
GA-rich |
Low_complexity |
| scaffold11475 |
281763 |
282584 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold11475 |
281776 |
281982 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold11475 |
282043 |
282520 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold11475 |
282959 |
283013 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold11475 |
283124 |
286477 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold11475 |
283173 |
284510 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold11475 |
284786 |
284865 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold11475 |
287898 |
287927 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
287942 |
287978 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
287942 |
288224 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
287972 |
288224 |
+ |
PL371 |
Unspecified |
| scaffold11475 |
288442 |
288471 |
+ |
(ATATC)n |
Simple_repeat |
| scaffold11475 |
290740 |
290982 |
- |
RS4 |
Unspecified |
| scaffold11475 |
291005 |
291043 |
+ |
(A)n |
Simple_repeat |
| scaffold11475 |
291258 |
291353 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
291488 |
291569 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
291870 |
291913 |
+ |
(T)n |
Simple_repeat |
| scaffold11475 |
293954 |
294691 |
- |
SHALINE10_MT |
LINE/L1 |
| scaffold11475 |
295255 |
295758 |
- |
PL6 |
Unspecified |
| scaffold11475 |
296427 |
296461 |
+ |
(GACAA)n |
Simple_repeat |
| scaffold11475 |
297034 |
297279 |
- |
RS1865 |
Unspecified |
| scaffold11475 |
299784 |
299815 |
+ |
A-rich |
Low_complexity |
| scaffold11475 |
303751 |
303779 |
+ |
(TA)n |
Simple_repeat |
| scaffold11475 |
303980 |
304206 |
- |
RS5655 |
Unspecified |
| scaffold11475 |
304514 |
304608 |
+ |
RS6825 |
Unspecified |
| scaffold11475 |
304631 |
305700 |
- |
RS5975 |
Unspecified |
| scaffold11475 |
305649 |
305928 |
- |
RS548 |
Unspecified |
| scaffold11475 |
305714 |
305928 |
- |
RS13658 |
Unspecified |
| scaffold11475 |
305930 |
306032 |
+ |
RS17445 |
Unspecified |
| scaffold11475 |
306039 |
306240 |
+ |
RS4597 |
Unspecified |
| scaffold11475 |
307074 |
307127 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
307859 |
308164 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold11475 |
308344 |
309137 |
+ |
Copia-71_VV-I |
LTR/Copia |