scaffold12384 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold12384 |
1 |
845 |
- |
RS247 |
Unspecified |
| scaffold12384 |
414 |
904 |
- |
RS151 |
Unspecified |
| scaffold12384 |
469 |
904 |
- |
RS247 |
Unspecified |
| scaffold12384 |
511 |
976 |
- |
RS247 |
Unspecified |
| scaffold12384 |
1026 |
1127 |
- |
RS6876 |
Unspecified |
| scaffold12384 |
1040 |
1127 |
- |
RS2579 |
Unspecified |
| scaffold12384 |
2239 |
3218 |
+ |
RS149 |
Unspecified |
| scaffold12384 |
3765 |
3873 |
- |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold12384 |
5025 |
5133 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold12384 |
7969 |
8424 |
- |
RS1739 |
Unspecified |
| scaffold12384 |
7972 |
8486 |
+ |
PL627 |
Unspecified |
| scaffold12384 |
8685 |
8726 |
+ |
(TTTTCGT)n |
Simple_repeat |
| scaffold12384 |
9267 |
9312 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold12384 |
9517 |
9764 |
+ |
RS8801 |
Unspecified |
| scaffold12384 |
10952 |
10991 |
+ |
(TCGCCG)n |
Simple_repeat |
| scaffold12384 |
12090 |
12168 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold12384 |
16592 |
16875 |
- |
PL100 |
Unspecified |
| scaffold12384 |
16807 |
16886 |
+ |
PL322 |
Unspecified |
| scaffold12384 |
16821 |
16895 |
- |
PL565 |
Unspecified |
| scaffold12384 |
21168 |
21206 |
+ |
(TATT)n |
Simple_repeat |
| scaffold12384 |
22803 |
23273 |
- |
PL53 |
Unspecified |
| scaffold12384 |
23241 |
23279 |
+ |
PL47 |
Unspecified |
| scaffold12384 |
23272 |
23367 |
- |
PL47 |
Unspecified |
| scaffold12384 |
23670 |
23784 |
+ |
RS782 |
Unspecified |
| scaffold12384 |
23949 |
23970 |
+ |
(ATT)n |
Simple_repeat |
| scaffold12384 |
25701 |
25726 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
27326 |
27342 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
29521 |
29572 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
30374 |
30399 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
31002 |
31018 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
31174 |
31208 |
+ |
(TTATAG)n |
Simple_repeat |
| scaffold12384 |
31352 |
31391 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
31417 |
31435 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
32084 |
32175 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold12384 |
32485 |
32576 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold12384 |
33124 |
33165 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold12384 |
33187 |
33236 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold12384 |
33566 |
33606 |
+ |
(TTTTTGA)n |
Simple_repeat |
| scaffold12384 |
33892 |
33948 |
+ |
(TATAAT)n |
Simple_repeat |
| scaffold12384 |
34318 |
34381 |
+ |
GA-rich |
Low_complexity |
| scaffold12384 |
36197 |
36597 |
- |
RS10615 |
Unspecified |
| scaffold12384 |
38081 |
38254 |
- |
RS233 |
Unspecified |
| scaffold12384 |
38100 |
38261 |
+ |
RS2719 |
Unspecified |
| scaffold12384 |
39269 |
39330 |
+ |
(CTT)n |
Simple_repeat |
| scaffold12384 |
39517 |
39556 |
+ |
(GCG)n |
Simple_repeat |
| scaffold12384 |
39616 |
39752 |
+ |
GA-rich |
Low_complexity |
| scaffold12384 |
39890 |
39957 |
+ |
(AT)n |
Simple_repeat |
| scaffold12384 |
41560 |
41576 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
44156 |
44177 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
46906 |
46922 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
48071 |
48106 |
+ |
(AAAAAAT)n |
Simple_repeat |
| scaffold12384 |
50775 |
50795 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
53253 |
53317 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
53975 |
54016 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
55653 |
55669 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
57491 |
57516 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
59535 |
59559 |
+ |
(TGA)n |
Simple_repeat |
| scaffold12384 |
59612 |
59662 |
- |
Copia-18_BRa-I |
LTR/Copia |
| scaffold12384 |
59914 |
60052 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold12384 |
60200 |
60326 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold12384 |
60856 |
61079 |
- |
PL396 |
Unspecified |
| scaffold12384 |
61374 |
61392 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
62822 |
62867 |
+ |
(AACTATT)n |
Simple_repeat |
| scaffold12384 |
62965 |
63021 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
63022 |
63037 |
+ |
(TATT)n |
Simple_repeat |
| scaffold12384 |
63689 |
63722 |
+ |
(TTAATTA)n |
Simple_repeat |
| scaffold12384 |
63737 |
63772 |
+ |
(TATTAA)n |
Simple_repeat |
| scaffold12384 |
63790 |
63827 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
64329 |
64382 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
66351 |
66387 |
+ |
(GT)n |
Simple_repeat |
| scaffold12384 |
68516 |
68560 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
68635 |
68676 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
69236 |
69269 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold12384 |
69535 |
69744 |
- |
RS215 |
Unspecified |
| scaffold12384 |
69564 |
69744 |
+ |
RS884 |
Unspecified |
| scaffold12384 |
69745 |
69865 |
- |
RS215 |
Unspecified |
| scaffold12384 |
70464 |
71237 |
- |
RS5561 |
Unspecified |
| scaffold12384 |
71248 |
71420 |
+ |
RS884 |
Unspecified |
| scaffold12384 |
71419 |
71452 |
+ |
(GATATA)n |
Simple_repeat |
| scaffold12384 |
71784 |
71849 |
- |
RS743 |
Unspecified |
| scaffold12384 |
71932 |
71959 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold12384 |
72129 |
72165 |
+ |
(AACAAAA)n |
Simple_repeat |
| scaffold12384 |
72297 |
72354 |
+ |
GA-rich |
Low_complexity |
| scaffold12384 |
72988 |
73063 |
+ |
GA-rich |
Low_complexity |
| scaffold12384 |
76275 |
76341 |
+ |
(GGT)n |
Simple_repeat |
| scaffold12384 |
76788 |
76842 |
+ |
(ATATTAA)n |
Simple_repeat |
| scaffold12384 |
78219 |
78255 |
+ |
(CCGCC)n |
Simple_repeat |
| scaffold12384 |
78397 |
78703 |
- |
RS14213 |
Unspecified |
| scaffold12384 |
79672 |
79727 |
- |
RS16201 |
Unspecified |
| scaffold12384 |
79868 |
80028 |
- |
RS2948 |
Unspecified |
| scaffold12384 |
79934 |
80067 |
- |
RS13855 |
Unspecified |
| scaffold12384 |
80147 |
80283 |
- |
RS13855 |
Unspecified |
| scaffold12384 |
82270 |
82419 |
+ |
RS4757 |
Unspecified |
| scaffold12384 |
83103 |
83154 |
+ |
(ATA)n |
Simple_repeat |
| scaffold12384 |
83291 |
83317 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
85790 |
85932 |
+ |
RS4757 |
Unspecified |
| scaffold12384 |
86609 |
86664 |
+ |
(AAT)n |
Simple_repeat |
| scaffold12384 |
86802 |
86828 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
89340 |
89363 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
90270 |
90292 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
91311 |
91474 |
+ |
RS7877 |
Unspecified |
| scaffold12384 |
92158 |
92383 |
+ |
RS2559 |
Unspecified |
| scaffold12384 |
92360 |
92418 |
- |
RS17813 |
Unspecified |
| scaffold12384 |
92459 |
92522 |
+ |
(GTTTT)n |
Simple_repeat |
| scaffold12384 |
92879 |
92941 |
- |
Copia-25_BRa-I |
LTR/Copia |
| scaffold12384 |
93162 |
93204 |
+ |
(GTTTAA)n |
Simple_repeat |
| scaffold12384 |
93320 |
93423 |
+ |
RS2100 |
Unspecified |
| scaffold12384 |
93342 |
93892 |
+ |
RS2015 |
Unspecified |
| scaffold12384 |
93540 |
93962 |
- |
RS138 |
Unspecified |
| scaffold12384 |
94080 |
94137 |
+ |
(ATTTCTG)n |
Simple_repeat |
| scaffold12384 |
94519 |
94539 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
94766 |
94951 |
- |
RS8899 |
Unspecified |
| scaffold12384 |
94873 |
95090 |
- |
RS9709 |
Unspecified |
| scaffold12384 |
94919 |
95130 |
- |
RS12607 |
Unspecified |
| scaffold12384 |
97640 |
97775 |
+ |
RS11237 |
Unspecified |
| scaffold12384 |
97955 |
98488 |
+ |
PL753 |
Unspecified |
| scaffold12384 |
98578 |
98630 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
99219 |
99282 |
+ |
(TTC)n |
Simple_repeat |
| scaffold12384 |
100711 |
100769 |
+ |
(GGT)n |
Simple_repeat |
| scaffold12384 |
101790 |
102170 |
+ |
RS160 |
Unspecified |
| scaffold12384 |
102190 |
102478 |
- |
RS1085 |
Unspecified |
| scaffold12384 |
102567 |
102593 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
103254 |
103283 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
103405 |
103809 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold12384 |
103435 |
103545 |
- |
Copia-39_Pru-I |
LTR/Copia |
| scaffold12384 |
103936 |
104422 |
+ |
PL6 |
Unspecified |
| scaffold12384 |
104588 |
104823 |
- |
PL126 |
Unspecified |
| scaffold12384 |
104948 |
105599 |
- |
Gypsy-13_Mad-I |
LTR/Gypsy |
| scaffold12384 |
104948 |
105139 |
- |
Gypsy-13_Mad-I |
LTR/Gypsy |
| scaffold12384 |
105083 |
105599 |
+ |
RS1464 |
Unspecified |
| scaffold12384 |
105614 |
105837 |
+ |
PL245 |
Unspecified |
| scaffold12384 |
106113 |
106137 |
+ |
(TAAAA)n |
Simple_repeat |
| scaffold12384 |
106184 |
106224 |
+ |
(TA)n |
Simple_repeat |
| scaffold12384 |
106398 |
106427 |
+ |
(TTA)n |
Simple_repeat |
| scaffold12384 |
106590 |
106606 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
107224 |
107406 |
- |
RS11125 |
Unspecified |
| scaffold12384 |
107562 |
108008 |
- |
RS548 |
Unspecified |
| scaffold12384 |
108811 |
108835 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
108888 |
108966 |
- |
PL100 |
Unspecified |
| scaffold12384 |
108933 |
109168 |
+ |
PL322 |
Unspecified |
| scaffold12384 |
109129 |
109190 |
+ |
PL322 |
Unspecified |
| scaffold12384 |
113170 |
113194 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
113908 |
113944 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
114261 |
114282 |
+ |
(GTG)n |
Simple_repeat |
| scaffold12384 |
114398 |
114434 |
+ |
(ATTTAG)n |
Simple_repeat |
| scaffold12384 |
117695 |
117728 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold12384 |
119638 |
119679 |
+ |
(AATC)n |
Simple_repeat |
| scaffold12384 |
119953 |
119973 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
120061 |
120103 |
+ |
(TGA)n |
Simple_repeat |
| scaffold12384 |
120165 |
120212 |
+ |
(TTTAAT)n |
Simple_repeat |
| scaffold12384 |
120417 |
120643 |
+ |
RS41 |
Unspecified |
| scaffold12384 |
120909 |
121128 |
- |
RS4 |
Unspecified |
| scaffold12384 |
121131 |
121170 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
121790 |
121825 |
+ |
(ATTAATG)n |
Simple_repeat |
| scaffold12384 |
122056 |
122118 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold12384 |
122652 |
122678 |
+ |
(TGA)n |
Simple_repeat |
| scaffold12384 |
123340 |
123427 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold12384 |
126414 |
126582 |
+ |
PL593 |
Unspecified |
| scaffold12384 |
126926 |
126971 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
129265 |
129287 |
+ |
(T)n |
Simple_repeat |
| scaffold12384 |
131151 |
131188 |
+ |
(TCA)n |
Simple_repeat |
| scaffold12384 |
132219 |
132366 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold12384 |
132395 |
132433 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold12384 |
135548 |
136069 |
- |
RS2105 |
Unspecified |
| scaffold12384 |
136717 |
136850 |
- |
RS4739 |
Unspecified |
| scaffold12384 |
136902 |
137001 |
- |
RS5189 |
Unspecified |
| scaffold12384 |
137252 |
137312 |
+ |
(GTTATTA)n |
Simple_repeat |
| scaffold12384 |
138126 |
138371 |
+ |
RS11838 |
Unspecified |
| scaffold12384 |
139040 |
139082 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
139239 |
139448 |
- |
RS9321 |
Unspecified |
| scaffold12384 |
140022 |
140176 |
+ |
(AAC)n |
Simple_repeat |
| scaffold12384 |
142183 |
142237 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
142418 |
142524 |
+ |
RS17806 |
Unspecified |
| scaffold12384 |
142865 |
143935 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold12384 |
143968 |
144585 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold12384 |
143973 |
144581 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold12384 |
144584 |
144698 |
- |
RS14 |
Unspecified |
| scaffold12384 |
144756 |
144830 |
- |
ATHILA-4_SBi-I |
LTR/Gypsy |
| scaffold12384 |
145721 |
146036 |
- |
ATHILA-4_SBi-I |
LTR/Gypsy |
| scaffold12384 |
146746 |
146785 |
+ |
(CAC)n |
Simple_repeat |
| scaffold12384 |
147353 |
147387 |
+ |
(TTTGGA)n |
Simple_repeat |
| scaffold12384 |
149753 |
150379 |
+ |
RS1210 |
Unspecified |
| scaffold12384 |
150313 |
150811 |
- |
RS4278 |
Unspecified |
| scaffold12384 |
150404 |
151019 |
+ |
PL219 |
Unspecified |
| scaffold12384 |
151467 |
151487 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
151488 |
151499 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
151765 |
151897 |
+ |
RS7397 |
Unspecified |
| scaffold12384 |
152353 |
152508 |
- |
RS6459 |
Unspecified |
| scaffold12384 |
152515 |
153309 |
- |
RS695 |
Unspecified |
| scaffold12384 |
153473 |
153511 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold12384 |
154428 |
154492 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
154535 |
154560 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
156000 |
156466 |
+ |
RS13986 |
Unspecified |
| scaffold12384 |
156509 |
156676 |
- |
RS9587 |
Unspecified |
| scaffold12384 |
158815 |
158836 |
+ |
(AAT)n |
Simple_repeat |
| scaffold12384 |
159239 |
159705 |
+ |
RS13986 |
Unspecified |
| scaffold12384 |
159748 |
159913 |
- |
RS9587 |
Unspecified |
| scaffold12384 |
162055 |
162076 |
+ |
(AAT)n |
Simple_repeat |
| scaffold12384 |
163672 |
163930 |
- |
RS10 |
Unspecified |
| scaffold12384 |
166357 |
166475 |
- |
MtPH-A6-3-Ia |
DNA/PIF-Harbinger |
| scaffold12384 |
166559 |
166851 |
+ |
RS1746 |
Unspecified |
| scaffold12384 |
166626 |
166920 |
- |
RS1746 |
Unspecified |
| scaffold12384 |
166950 |
166990 |
+ |
GA-rich |
Low_complexity |
| scaffold12384 |
167143 |
167192 |
+ |
(TTCCCC)n |
Simple_repeat |
| scaffold12384 |
168711 |
168969 |
- |
RS10 |
Unspecified |
| scaffold12384 |
171637 |
171664 |
+ |
(A)n |
Simple_repeat |
| scaffold12384 |
171882 |
171910 |
+ |
(CAC)n |
Simple_repeat |
| scaffold12384 |
172726 |
172828 |
- |
RS714 |
Unspecified |
| scaffold12384 |
173144 |
173324 |
- |
RS12178 |
Unspecified |
| scaffold12384 |
173885 |
173994 |
+ |
RS265 |
Unspecified |
| scaffold12384 |
174053 |
174141 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold12384 |
174134 |
174258 |
+ |
RS265 |
Unspecified |
| scaffold12384 |
174272 |
174457 |
+ |
RS917 |
Unspecified |
| scaffold12384 |
175212 |
175321 |
+ |
RS265 |
Unspecified |
| scaffold12384 |
175379 |
175467 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold12384 |
175460 |
175584 |
+ |
RS265 |
Unspecified |
| scaffold12384 |
175981 |
176305 |
- |
DNA3-11_Mad |
DNA/PIF-Harbinger |
| scaffold12384 |
177762 |
178408 |
+ |
RS1207 |
Unspecified |
| scaffold12384 |
178638 |
178814 |
- |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold12384 |
179330 |
179579 |
- |
RS1351 |
Unspecified |
| scaffold12384 |
179584 |
179655 |
+ |
(TAATTAA)n |
Simple_repeat |
| scaffold12384 |
179845 |
180961 |
+ |
RS1686 |
Unspecified |
| scaffold12384 |
181940 |
182100 |
+ |
RS1900 |
Unspecified |
| scaffold12384 |
182306 |
182419 |
- |
PL827 |
Unspecified |
| scaffold12384 |
182490 |
182793 |
- |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold12384 |
182726 |
182793 |
- |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold12384 |
182794 |
182810 |
- |
Copia-90_Mad-I |
LTR/Copia |
| scaffold12384 |
182969 |
183874 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold12384 |
183171 |
183847 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold12384 |
184332 |
184494 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold12384 |
184519 |
185934 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold12384 |
184535 |
184761 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold12384 |
184735 |
185880 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold12384 |
187056 |
187109 |
+ |
(TGTTAT)n |
Simple_repeat |
| scaffold12384 |
187489 |
187567 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold12384 |
187871 |
187924 |
+ |
(TGTTAT)n |
Simple_repeat |
| scaffold12384 |
188982 |
189471 |
- |
PL234 |
Unspecified |
| scaffold12384 |
189472 |
189662 |
+ |
RS556 |
Unspecified |
| scaffold12384 |
190090 |
190115 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold12384 |
190639 |
190675 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
191395 |
191473 |
+ |
(TGATTA)n |
Simple_repeat |
| scaffold12384 |
191474 |
191727 |
- |
PL652 |
Unspecified |
| scaffold12384 |
191719 |
192434 |
+ |
RS362 |
Unspecified |
| scaffold12384 |
193021 |
193408 |
- |
RS468 |
Unspecified |
| scaffold12384 |
193134 |
193442 |
- |
RS8789 |
Unspecified |
| scaffold12384 |
194216 |
194243 |
+ |
A-rich |
Low_complexity |
| scaffold12384 |
194497 |
194540 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold12384 |
194659 |
194723 |
+ |
(TAA)n |
Simple_repeat |
| scaffold12384 |
195197 |
195420 |
+ |
RS51 |
Unspecified |
| scaffold12384 |
197237 |
198027 |
+ |
RS934 |
Unspecified |