scaffold12489 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold12489 |
1 |
154 |
+ |
RS8403 |
Unspecified |
| scaffold12489 |
467 |
507 |
+ |
(AACA)n |
Simple_repeat |
| scaffold12489 |
593 |
624 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
1431 |
2074 |
+ |
RS2911 |
Unspecified |
| scaffold12489 |
1627 |
2312 |
- |
RS1200 |
Unspecified |
| scaffold12489 |
1870 |
2769 |
- |
RS398 |
Unspecified |
| scaffold12489 |
2648 |
2801 |
+ |
PL830 |
Unspecified |
| scaffold12489 |
2772 |
3548 |
- |
RS1447 |
Unspecified |
| scaffold12489 |
2772 |
3341 |
+ |
PL830 |
Unspecified |
| scaffold12489 |
3557 |
3820 |
- |
Mariner1_BV |
DNA/TcMar-Stowaway |
| scaffold12489 |
4403 |
4438 |
+ |
(T)n |
Simple_repeat |
| scaffold12489 |
4538 |
4621 |
+ |
CACTA-Q |
DNA/CMC-EnSpm |
| scaffold12489 |
4777 |
4967 |
- |
RS1919 |
Unspecified |
| scaffold12489 |
4980 |
5100 |
+ |
Helitron1 |
RC/Helitron |
| scaffold12489 |
5317 |
5363 |
+ |
RS1241 |
Unspecified |
| scaffold12489 |
6059 |
6108 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
6109 |
6138 |
+ |
(A)n |
Simple_repeat |
| scaffold12489 |
6184 |
6232 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold12489 |
7024 |
7239 |
+ |
RS1048 |
Unspecified |
| scaffold12489 |
8854 |
9816 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold12489 |
9178 |
9275 |
- |
SHAMUDRA3_MT |
DNA/MULE-MuDR |
| scaffold12489 |
9416 |
9564 |
- |
MUMET2 |
DNA/MULE-MuDR |
| scaffold12489 |
9887 |
11110 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold12489 |
9934 |
10348 |
- |
MuDR-7_VV |
DNA/MULE-MuDR |
| scaffold12489 |
11849 |
12576 |
- |
RS1048 |
Unspecified |
| scaffold12489 |
15921 |
15956 |
+ |
(CCTCAA)n |
Simple_repeat |
| scaffold12489 |
16709 |
16755 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold12489 |
17073 |
17106 |
+ |
(TTGAA)n |
Simple_repeat |
| scaffold12489 |
17381 |
17421 |
+ |
(ACGTATT)n |
Simple_repeat |
| scaffold12489 |
18524 |
18566 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
19384 |
19470 |
- |
MuDR-6_Mad |
DNA/MULE-MuDR |
| scaffold12489 |
21570 |
21646 |
+ |
RS15316 |
Unspecified |
| scaffold12489 |
23378 |
23483 |
- |
RS10744 |
Unspecified |
| scaffold12489 |
23568 |
23608 |
+ |
(GAT)n |
Simple_repeat |
| scaffold12489 |
24517 |
24773 |
- |
RS3888 |
Unspecified |
| scaffold12489 |
24899 |
25137 |
- |
RS11499 |
Unspecified |
| scaffold12489 |
25175 |
25318 |
- |
RS2272 |
Unspecified |
| scaffold12489 |
25290 |
25396 |
- |
RS13157 |
Unspecified |
| scaffold12489 |
26121 |
26144 |
+ |
(AAT)n |
Simple_repeat |
| scaffold12489 |
26620 |
26645 |
+ |
(A)n |
Simple_repeat |
| scaffold12489 |
26650 |
26684 |
+ |
(TCGAAAC)n |
Simple_repeat |
| scaffold12489 |
26932 |
26978 |
+ |
(CGG)n |
Simple_repeat |
| scaffold12489 |
30394 |
30434 |
+ |
(T)n |
Simple_repeat |
| scaffold12489 |
32439 |
32553 |
+ |
RS9879 |
Unspecified |
| scaffold12489 |
33233 |
33251 |
+ |
(A)n |
Simple_repeat |
| scaffold12489 |
34020 |
34057 |
+ |
(TTTTTG)n |
Simple_repeat |
| scaffold12489 |
34415 |
34521 |
- |
RS10744 |
Unspecified |
| scaffold12489 |
34740 |
34893 |
- |
RS1752 |
Unspecified |
| scaffold12489 |
35704 |
35963 |
+ |
RS1832 |
Unspecified |
| scaffold12489 |
38533 |
38575 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold12489 |
39091 |
39115 |
+ |
(T)n |
Simple_repeat |
| scaffold12489 |
39270 |
39413 |
- |
RS7319 |
Unspecified |
| scaffold12489 |
40033 |
40152 |
- |
RS17386 |
Unspecified |
| scaffold12489 |
43564 |
43656 |
- |
Gypsy-13_SMo-LTR |
LTR/Gypsy |
| scaffold12489 |
44255 |
44301 |
+ |
(CGGCC)n |
Simple_repeat |
| scaffold12489 |
44668 |
45005 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
44668 |
44785 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
44731 |
45005 |
+ |
RS14228 |
Unspecified |
| scaffold12489 |
45917 |
45966 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
46122 |
46261 |
+ |
(TTTGGA)n |
Simple_repeat |
| scaffold12489 |
47090 |
47137 |
+ |
(TAC)n |
Simple_repeat |
| scaffold12489 |
47178 |
47413 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold12489 |
52915 |
53060 |
- |
RS10379 |
Unspecified |
| scaffold12489 |
53644 |
53685 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
53934 |
53980 |
+ |
(TAA)n |
Simple_repeat |
| scaffold12489 |
54442 |
54503 |
+ |
(CGATTCA)n |
Simple_repeat |
| scaffold12489 |
64195 |
64243 |
+ |
RS1854 |
Unspecified |
| scaffold12489 |
64602 |
64659 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold12489 |
64683 |
64841 |
- |
RS8408 |
Unspecified |
| scaffold12489 |
65231 |
65448 |
+ |
RS5520 |
Unspecified |
| scaffold12489 |
66433 |
66636 |
+ |
RS13599 |
Unspecified |
| scaffold12489 |
66730 |
67983 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold12489 |
68058 |
69699 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold12489 |
69702 |
69848 |
+ |
RS13599 |
Unspecified |
| scaffold12489 |
70662 |
70693 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold12489 |
72352 |
72861 |
- |
RS1908 |
Unspecified |
| scaffold12489 |
73771 |
73824 |
+ |
(TTA)n |
Simple_repeat |
| scaffold12489 |
73950 |
73989 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold12489 |
74316 |
74371 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
74785 |
75118 |
+ |
RS16617 |
Unspecified |
| scaffold12489 |
75660 |
75818 |
+ |
RS17639 |
Unspecified |
| scaffold12489 |
77162 |
77178 |
+ |
(T)n |
Simple_repeat |
| scaffold12489 |
77446 |
77476 |
+ |
(TA)n |
Simple_repeat |
| scaffold12489 |
78436 |
78580 |
+ |
RS133 |
Unspecified |
| scaffold12489 |
78639 |
78744 |
+ |
RS4 |
Unspecified |
| scaffold12489 |
78879 |
78911 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
79065 |
79203 |
+ |
RS7934 |
Unspecified |
| scaffold12489 |
79394 |
79415 |
+ |
(A)n |
Simple_repeat |
| scaffold12489 |
79645 |
79802 |
- |
RS347 |
Unspecified |
| scaffold12489 |
90463 |
90499 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold12489 |
90761 |
90889 |
+ |
RS1115 |
Unspecified |
| scaffold12489 |
91159 |
91203 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold12489 |
91296 |
91338 |
+ |
(ATA)n |
Simple_repeat |
| scaffold12489 |
91465 |
91513 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
91513 |
91781 |
- |
RS106 |
Unspecified |
| scaffold12489 |
92049 |
92112 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold12489 |
92656 |
92708 |
+ |
(TTATCA)n |
Simple_repeat |
| scaffold12489 |
95020 |
95054 |
+ |
(TAA)n |
Simple_repeat |
| scaffold12489 |
96093 |
96323 |
- |
RS15131 |
Unspecified |
| scaffold12489 |
96586 |
96614 |
+ |
(T)n |
Simple_repeat |
| scaffold12489 |
96766 |
96794 |
+ |
(ATC)n |
Simple_repeat |
| scaffold12489 |
96815 |
96833 |
+ |
(T)n |
Simple_repeat |
| scaffold12489 |
97061 |
97084 |
+ |
(T)n |
Simple_repeat |
| scaffold12489 |
97280 |
97316 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold12489 |
97733 |
97786 |
+ |
(GATGAG)n |
Simple_repeat |
| scaffold12489 |
98138 |
98501 |
+ |
SHALINE2_MT |
LINE/L1 |
| scaffold12489 |
99442 |
99458 |
+ |
(GCA)n |
Simple_repeat |
| scaffold12489 |
102121 |
102296 |
- |
RS275 |
Unspecified |
| scaffold12489 |
102283 |
102399 |
+ |
RS5279 |
Unspecified |
| scaffold12489 |
102415 |
102475 |
+ |
RS5279 |
Unspecified |
| scaffold12489 |
102486 |
102658 |
+ |
RS275 |
Unspecified |
| scaffold12489 |
102738 |
102979 |
- |
RS1705 |
Unspecified |
| scaffold12489 |
103077 |
103195 |
+ |
RS8152 |
Unspecified |
| scaffold12489 |
103828 |
103915 |
+ |
(TGG)n |
Simple_repeat |
| scaffold12489 |
104376 |
104536 |
- |
RS79 |
Unspecified |
| scaffold12489 |
104523 |
104580 |
+ |
RS18012 |
Unspecified |
| scaffold12489 |
105589 |
105661 |
+ |
RS10001 |
Unspecified |
| scaffold12489 |
106244 |
106477 |
+ |
RS9885 |
Unspecified |
| scaffold12489 |
106523 |
106750 |
+ |
RS12429 |
Unspecified |
| scaffold12489 |
106685 |
106963 |
- |
RS595 |
Unspecified |
| scaffold12489 |
107068 |
107172 |
+ |
RS8036 |
Unspecified |
| scaffold12489 |
107969 |
108297 |
+ |
RS791 |
Unspecified |
| scaffold12489 |
108385 |
108627 |
+ |
RS6721 |
Unspecified |
| scaffold12489 |
108430 |
108757 |
+ |
RS3960 |
Unspecified |
| scaffold12489 |
109245 |
109487 |
+ |
RS6721 |
Unspecified |
| scaffold12489 |
109290 |
109884 |
+ |
RS3960 |
Unspecified |
| scaffold12489 |
112778 |
112815 |
+ |
A-rich |
Low_complexity |
| scaffold12489 |
112913 |
113225 |
- |
RS2386 |
Unspecified |
| scaffold12489 |
114120 |
114233 |
- |
RS1237 |
Unspecified |
| scaffold12489 |
114311 |
114695 |
- |
RS1237 |
Unspecified |