scaffold13212 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold13212 |
18 |
213 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold13212 |
1478 |
1517 |
+ |
(ATA)n |
Simple_repeat |
| scaffold13212 |
1903 |
2059 |
- |
PL143 |
Unspecified |
| scaffold13212 |
1935 |
2274 |
- |
RS4686 |
Unspecified |
| scaffold13212 |
2296 |
2339 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold13212 |
2599 |
2649 |
+ |
(TAT)n |
Simple_repeat |
| scaffold13212 |
3104 |
3170 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
3739 |
3804 |
- |
TE-4_Mad |
Unknown |
| scaffold13212 |
4367 |
5979 |
- |
RS30 |
Unspecified |
| scaffold13212 |
6261 |
6342 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold13212 |
6315 |
8248 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold13212 |
8280 |
8311 |
+ |
RS2023 |
Unspecified |
| scaffold13212 |
8499 |
9104 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold13212 |
9694 |
9731 |
+ |
(GTT)n |
Simple_repeat |
| scaffold13212 |
10186 |
10637 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold13212 |
10918 |
10960 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
11430 |
11459 |
+ |
(CAA)n |
Simple_repeat |
| scaffold13212 |
12869 |
12947 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold13212 |
13577 |
13625 |
+ |
RS731 |
Unspecified |
| scaffold13212 |
13641 |
13707 |
+ |
(AAGCATA)n |
Simple_repeat |
| scaffold13212 |
13886 |
14092 |
+ |
RS446 |
Unspecified |
| scaffold13212 |
14195 |
14864 |
- |
PL911 |
Unspecified |
| scaffold13212 |
14315 |
15311 |
- |
RS446 |
Unspecified |
| scaffold13212 |
15551 |
15943 |
- |
RS29 |
Unspecified |
| scaffold13212 |
18182 |
18222 |
+ |
(AAGAAT)n |
Simple_repeat |
| scaffold13212 |
19879 |
19932 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold13212 |
20146 |
20406 |
- |
RS26 |
Unspecified |
| scaffold13212 |
20415 |
20885 |
+ |
(CCTCC)n |
Simple_repeat |
| scaffold13212 |
20819 |
20885 |
+ |
(CCTCC)n |
Simple_repeat |
| scaffold13212 |
21050 |
21803 |
+ |
RS780 |
Unspecified |
| scaffold13212 |
22334 |
22372 |
+ |
(TTTGTA)n |
Simple_repeat |
| scaffold13212 |
22515 |
22555 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
22834 |
23077 |
- |
RS4 |
Unspecified |
| scaffold13212 |
24261 |
24320 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13212 |
24402 |
24461 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold13212 |
27569 |
27657 |
+ |
RS736 |
Unspecified |
| scaffold13212 |
28434 |
28455 |
+ |
(TA)n |
Simple_repeat |
| scaffold13212 |
28765 |
28834 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
30941 |
30990 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
33150 |
33202 |
+ |
Helitron5 |
RC/Helitron |
| scaffold13212 |
34957 |
35091 |
- |
RS12820 |
Unspecified |
| scaffold13212 |
37050 |
37071 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold13212 |
37249 |
37346 |
- |
Gypsy-8-I_CR |
LTR/Gypsy |
| scaffold13212 |
37616 |
38019 |
+ |
PL3 |
Unspecified |
| scaffold13212 |
38022 |
38052 |
+ |
(T)n |
Simple_repeat |
| scaffold13212 |
38409 |
38451 |
+ |
G-rich |
Low_complexity |
| scaffold13212 |
39000 |
39041 |
+ |
G-rich |
Low_complexity |
| scaffold13212 |
39346 |
39547 |
- |
PL68 |
Unspecified |
| scaffold13212 |
40923 |
41191 |
- |
Monkey_MA |
LTR/Gypsy |
| scaffold13212 |
41648 |
42139 |
- |
Gypsy9-VV_I-int |
LTR/Gypsy |
| scaffold13212 |
42678 |
42719 |
+ |
G-rich |
Low_complexity |
| scaffold13212 |
44118 |
44168 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold13212 |
45129 |
45431 |
+ |
PL9 |
Unspecified |
| scaffold13212 |
47100 |
47276 |
- |
RS5 |
Unspecified |
| scaffold13212 |
47871 |
47901 |
+ |
(GGAGG)n |
Simple_repeat |
| scaffold13212 |
50454 |
50493 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold13212 |
50744 |
50833 |
+ |
(T)n |
Simple_repeat |
| scaffold13212 |
50920 |
50963 |
+ |
(T)n |
Simple_repeat |
| scaffold13212 |
50987 |
51021 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold13212 |
51193 |
51224 |
+ |
(A)n |
Simple_repeat |
| scaffold13212 |
51571 |
51658 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold13212 |
52135 |
52172 |
+ |
(T)n |
Simple_repeat |
| scaffold13212 |
52807 |
52847 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold13212 |
53150 |
53647 |
+ |
PL82 |
Unspecified |
| scaffold13212 |
53646 |
54068 |
- |
RS323 |
Unspecified |
| scaffold13212 |
53877 |
54092 |
+ |
RS52 |
Unspecified |
| scaffold13212 |
55329 |
55561 |
- |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold13212 |
56020 |
56080 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold13212 |
57056 |
57072 |
+ |
(A)n |
Simple_repeat |
| scaffold13212 |
58366 |
58401 |
+ |
(TTC)n |
Simple_repeat |
| scaffold13212 |
59277 |
60617 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold13212 |
61065 |
61120 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
62044 |
62093 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
63140 |
63663 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold13212 |
64632 |
64758 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold13212 |
66351 |
66393 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold13212 |
66726 |
66945 |
- |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold13212 |
69807 |
69860 |
+ |
(TTGTAAT)n |
Simple_repeat |
| scaffold13212 |
70354 |
70548 |
+ |
RS10607 |
Unspecified |
| scaffold13212 |
71363 |
71439 |
- |
Gypsy-20_BRa-I |
LTR/Gypsy |
| scaffold13212 |
71744 |
71873 |
- |
Gypsy-20_BRa-I |
LTR/Gypsy |
| scaffold13212 |
72084 |
72245 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold13212 |
72254 |
74322 |
- |
RS1686 |
Unspecified |
| scaffold13212 |
74363 |
74409 |
+ |
(TTTGTG)n |
Simple_repeat |
| scaffold13212 |
75134 |
75175 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
75417 |
75478 |
+ |
(CAT)n |
Simple_repeat |
| scaffold13212 |
75706 |
76287 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold13212 |
76417 |
76949 |
+ |
RS1930 |
Unspecified |
| scaffold13212 |
76473 |
77054 |
+ |
RS1706 |
Unspecified |
| scaffold13212 |
76596 |
77257 |
+ |
RS1207 |
Unspecified |
| scaffold13212 |
77489 |
77660 |
- |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold13212 |
78301 |
78590 |
- |
PL5 |
Unspecified |
| scaffold13212 |
78594 |
78641 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
78877 |
79217 |
+ |
PL785 |
Unspecified |
| scaffold13212 |
79826 |
79875 |
+ |
(GTATTAT)n |
Simple_repeat |
| scaffold13212 |
80103 |
80160 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
81152 |
81204 |
+ |
(TT)n |
Simple_repeat |
| scaffold13212 |
81444 |
81479 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
83690 |
83735 |
+ |
(ATCC)n |
Simple_repeat |
| scaffold13212 |
83805 |
83854 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
84002 |
84025 |
+ |
(T)n |
Simple_repeat |
| scaffold13212 |
84625 |
84762 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
84968 |
85046 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold13212 |
85204 |
85246 |
+ |
A-rich |
Low_complexity |
| scaffold13212 |
86427 |
86725 |
+ |
RS3040 |
Unspecified |
| scaffold13212 |
86711 |
86777 |
+ |
RS3040 |
Unspecified |
| scaffold13212 |
87375 |
87720 |
+ |
RS1963 |
Unspecified |
| scaffold13212 |
87744 |
87811 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold13212 |
87972 |
88928 |
- |
PL678 |
Unspecified |
| scaffold13212 |
88933 |
89303 |
+ |
PL911 |
Unspecified |
| scaffold13212 |
89528 |
90631 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold13212 |
92689 |
92755 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13212 |
93025 |
94398 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold13212 |
93063 |
93513 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold13212 |
93710 |
94397 |
- |
Copia7-ZM_I-int |
LTR/Copia |