scaffold13878 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold13878 |
2309 |
2361 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold13878 |
2475 |
2547 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
4147 |
4203 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
4308 |
4374 |
+ |
G-rich |
Low_complexity |
| scaffold13878 |
4756 |
4910 |
- |
RS1849 |
Unspecified |
| scaffold13878 |
4765 |
4902 |
- |
PL931 |
Unspecified |
| scaffold13878 |
4909 |
5262 |
+ |
PL522 |
Unspecified |
| scaffold13878 |
5258 |
6365 |
- |
RS658 |
Unspecified |
| scaffold13878 |
6973 |
7769 |
+ |
PL646 |
Unspecified |
| scaffold13878 |
8221 |
8245 |
+ |
(T)n |
Simple_repeat |
| scaffold13878 |
8498 |
8572 |
+ |
(CGA)n |
Simple_repeat |
| scaffold13878 |
8740 |
8805 |
+ |
(CGG)n |
Simple_repeat |
| scaffold13878 |
8956 |
8990 |
+ |
GA-rich |
Low_complexity |
| scaffold13878 |
9056 |
9078 |
+ |
(TGG)n |
Simple_repeat |
| scaffold13878 |
9915 |
9964 |
+ |
GA-rich |
Low_complexity |
| scaffold13878 |
10664 |
10762 |
- |
Gypsy-23_ST-LTR |
LTR/Gypsy |
| scaffold13878 |
11171 |
11227 |
- |
Copia-18_EPa-I |
LTR/Copia |
| scaffold13878 |
11310 |
11353 |
+ |
(AAT)n |
Simple_repeat |
| scaffold13878 |
12051 |
12509 |
+ |
PL352 |
Unspecified |
| scaffold13878 |
13051 |
13139 |
- |
PL488 |
Unspecified |
| scaffold13878 |
13133 |
13718 |
+ |
RS3121 |
Unspecified |
| scaffold13878 |
14335 |
14388 |
+ |
Copia10-VV_LTR |
LTR/Copia |
| scaffold13878 |
14681 |
14783 |
+ |
LT1_EPa |
LTR? |
| scaffold13878 |
14844 |
14926 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold13878 |
15194 |
15232 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold13878 |
15638 |
15702 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold13878 |
16118 |
16177 |
+ |
(TTTATAC)n |
Simple_repeat |
| scaffold13878 |
16796 |
17117 |
- |
PL475 |
Unspecified |
| scaffold13878 |
17229 |
17293 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold13878 |
17709 |
17766 |
+ |
(TTAATTC)n |
Simple_repeat |
| scaffold13878 |
17826 |
17911 |
+ |
PL560 |
Unspecified |
| scaffold13878 |
19567 |
19599 |
+ |
(ATGT)n |
Simple_repeat |
| scaffold13878 |
22665 |
22780 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold13878 |
22781 |
23476 |
+ |
Copia-2_SL-I |
LTR/Copia |
| scaffold13878 |
23779 |
24029 |
- |
RS4444 |
Unspecified |
| scaffold13878 |
24007 |
24222 |
- |
RS844 |
Unspecified |
| scaffold13878 |
24315 |
24436 |
+ |
Copia-58_VV-LTR |
LTR/Copia |
| scaffold13878 |
24384 |
24450 |
+ |
Gypsy-32_Mad-LTR |
LTR/Gypsy |
| scaffold13878 |
25041 |
25172 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold13878 |
25720 |
25804 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold13878 |
25838 |
26257 |
+ |
RS2240 |
Unspecified |
| scaffold13878 |
26801 |
27089 |
- |
PL9 |
Unspecified |
| scaffold13878 |
27114 |
27148 |
+ |
G-rich |
Low_complexity |
| scaffold13878 |
28052 |
28072 |
+ |
(A)n |
Simple_repeat |
| scaffold13878 |
28168 |
28436 |
- |
RS1 |
Unspecified |
| scaffold13878 |
28627 |
28696 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold13878 |
28627 |
29260 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold13878 |
28670 |
29260 |
- |
PL561 |
Unspecified |
| scaffold13878 |
31867 |
31905 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold13878 |
32782 |
32815 |
+ |
(CCCCG)n |
Simple_repeat |
| scaffold13878 |
32883 |
32922 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
33280 |
33330 |
+ |
(GGT)n |
Simple_repeat |
| scaffold13878 |
35040 |
35063 |
+ |
(GAAA)n |
Simple_repeat |
| scaffold13878 |
37406 |
37528 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold13878 |
38185 |
38749 |
- |
PL390 |
Unspecified |
| scaffold13878 |
39219 |
39385 |
+ |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold13878 |
39572 |
39606 |
+ |
(ACAAT)n |
Simple_repeat |
| scaffold13878 |
39625 |
39706 |
+ |
(ACC)n |
Simple_repeat |
| scaffold13878 |
40217 |
40261 |
+ |
GA-rich |
Low_complexity |
| scaffold13878 |
41432 |
41471 |
+ |
(TGA)n |
Simple_repeat |
| scaffold13878 |
41912 |
41981 |
+ |
(GGTGGTC)n |
Simple_repeat |
| scaffold13878 |
42365 |
42484 |
+ |
RS10612 |
Unspecified |
| scaffold13878 |
43871 |
44069 |
- |
RS2560 |
Unspecified |
| scaffold13878 |
45035 |
45388 |
- |
RS5597 |
Unspecified |
| scaffold13878 |
46164 |
46198 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold13878 |
47626 |
47651 |
+ |
(GAA)n |
Simple_repeat |
| scaffold13878 |
48165 |
48214 |
+ |
MuDR-N9_SBi |
DNA/MULE-MuDR |
| scaffold13878 |
49027 |
49073 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
49281 |
49381 |
- |
RS2312 |
Unspecified |
| scaffold13878 |
49489 |
49611 |
- |
RS927 |
Unspecified |
| scaffold13878 |
49596 |
49707 |
+ |
RS957 |
Unspecified |
| scaffold13878 |
49729 |
49768 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
50170 |
50236 |
+ |
(TT)n |
Simple_repeat |
| scaffold13878 |
50506 |
50550 |
+ |
(ATG)n |
Simple_repeat |
| scaffold13878 |
51752 |
51784 |
+ |
(T)n |
Simple_repeat |
| scaffold13878 |
52907 |
53338 |
- |
PL800 |
Unspecified |
| scaffold13878 |
52908 |
53401 |
+ |
PL89 |
Unspecified |
| scaffold13878 |
53323 |
53441 |
- |
RS426 |
Unspecified |
| scaffold13878 |
53373 |
53481 |
- |
PL841 |
Unspecified |
| scaffold13878 |
53774 |
53830 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold13878 |
53987 |
54021 |
+ |
(TCACACT)n |
Simple_repeat |
| scaffold13878 |
54535 |
54571 |
+ |
(ATA)n |
Simple_repeat |
| scaffold13878 |
54969 |
55038 |
+ |
(TTGATTT)n |
Simple_repeat |
| scaffold13878 |
55340 |
55391 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold13878 |
55815 |
55947 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold13878 |
56019 |
56897 |
+ |
RS3816 |
Unspecified |
| scaffold13878 |
56624 |
57035 |
+ |
RS6243 |
Unspecified |
| scaffold13878 |
57077 |
57366 |
+ |
RS3602 |
Unspecified |
| scaffold13878 |
57136 |
57740 |
+ |
RS6778 |
Unspecified |
| scaffold13878 |
58865 |
59788 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold13878 |
59272 |
59377 |
- |
MuDR-2_SBi |
DNA/MULE-MuDR |
| scaffold13878 |
59423 |
59648 |
- |
MuDR-5_OS |
DNA/MULE-MuDR |
| scaffold13878 |
59959 |
59988 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
60328 |
60382 |
+ |
GA-rich |
Low_complexity |
| scaffold13878 |
61628 |
61680 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
61752 |
61902 |
+ |
RS8626 |
Unspecified |
| scaffold13878 |
62050 |
62069 |
+ |
(AT)n |
Simple_repeat |
| scaffold13878 |
62226 |
62456 |
- |
RS12199 |
Unspecified |
| scaffold13878 |
62362 |
62478 |
- |
RS8706 |
Unspecified |
| scaffold13878 |
62471 |
62517 |
- |
RS8706 |
Unspecified |
| scaffold13878 |
64317 |
64372 |
+ |
(T)n |
Simple_repeat |
| scaffold13878 |
64586 |
64883 |
+ |
PL439 |
Unspecified |
| scaffold13878 |
65106 |
65148 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
65430 |
65456 |
+ |
A-rich |
Low_complexity |
| scaffold13878 |
65463 |
65515 |
+ |
(TTTTAG)n |
Simple_repeat |
| scaffold13878 |
65841 |
66491 |
- |
RS6631 |
Unspecified |
| scaffold13878 |
66745 |
66787 |
+ |
(TTACAAT)n |
Simple_repeat |
| scaffold13878 |
67016 |
67068 |
+ |
(TTTTAC)n |
Simple_repeat |
| scaffold13878 |
67069 |
67074 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold13878 |
67594 |
67641 |
+ |
(TTTTCTT)n |
Simple_repeat |
| scaffold13878 |
67643 |
67683 |
+ |
(CATA)n |
Simple_repeat |
| scaffold13878 |
67814 |
67869 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold13878 |
68140 |
68331 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold13878 |
68867 |
69241 |
- |
RS395 |
Unspecified |
| scaffold13878 |
69460 |
69486 |
+ |
(ATATC)n |
Simple_repeat |
| scaffold13878 |
69768 |
70544 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold13878 |
70127 |
70318 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold13878 |
70442 |
70480 |
+ |
(CCCAAC)n |
Simple_repeat |
| scaffold13878 |
70491 |
71951 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold13878 |
70614 |
70997 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold13878 |
71159 |
71929 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold13878 |
71619 |
71933 |
- |
Copia-77_SB-I |
LTR/Copia |
| scaffold13878 |
71964 |
72272 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold13878 |
72272 |
72318 |
- |
RS19 |
Unspecified |
| scaffold13878 |
72319 |
73359 |
- |
RS9 |
Unspecified |
| scaffold13878 |
75589 |
76099 |
- |
RS3121 |
Unspecified |
| scaffold13878 |
75693 |
76099 |
+ |
RS2174 |
Unspecified |
| scaffold13878 |
76200 |
76345 |
+ |
RS1172 |
Unspecified |
| scaffold13878 |
76233 |
76492 |
+ |
RS356 |
Unspecified |
| scaffold13878 |
76457 |
76504 |
- |
RS18072 |
Unspecified |
| scaffold13878 |
76706 |
76891 |
- |
RS1797 |
Unspecified |
| scaffold13878 |
79693 |
79925 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold13878 |
80032 |
80075 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold13878 |
81428 |
81511 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold13878 |
81951 |
81968 |
+ |
(T)n |
Simple_repeat |
| scaffold13878 |
85845 |
85876 |
+ |
(CT)n |
Simple_repeat |