scaffold1435 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1435 |
963 |
1036 |
+ |
(AATTAC)n |
Simple_repeat |
| scaffold1435 |
1403 |
1432 |
+ |
(AT)n |
Simple_repeat |
| scaffold1435 |
2340 |
2365 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
2386 |
2504 |
- |
RS2097 |
Unspecified |
| scaffold1435 |
2505 |
2550 |
+ |
(A)n |
Simple_repeat |
| scaffold1435 |
2601 |
2746 |
- |
RS2097 |
Unspecified |
| scaffold1435 |
2828 |
3129 |
- |
RS5235 |
Unspecified |
| scaffold1435 |
2955 |
3551 |
+ |
RS995 |
Unspecified |
| scaffold1435 |
3397 |
3745 |
- |
RS10554 |
Unspecified |
| scaffold1435 |
3841 |
4020 |
- |
RS232 |
Unspecified |
| scaffold1435 |
4291 |
4324 |
+ |
(A)n |
Simple_repeat |
| scaffold1435 |
4335 |
4361 |
+ |
(CGCCC)n |
Simple_repeat |
| scaffold1435 |
4362 |
4478 |
+ |
(CGC)n |
Simple_repeat |
| scaffold1435 |
4529 |
4576 |
+ |
(TTTGA)n |
Simple_repeat |
| scaffold1435 |
4577 |
4793 |
+ |
T-rich |
Low_complexity |
| scaffold1435 |
4797 |
5018 |
+ |
RS1136 |
Unspecified |
| scaffold1435 |
6059 |
6274 |
- |
ATENSAT1 |
Satellite |
| scaffold1435 |
6181 |
6277 |
+ |
ATENSPM4 |
DNA/CMC-EnSpm |
| scaffold1435 |
6309 |
7289 |
- |
RS732 |
Unspecified |
| scaffold1435 |
7486 |
7769 |
+ |
RS66 |
Unspecified |
| scaffold1435 |
7541 |
8372 |
- |
RS667 |
Unspecified |
| scaffold1435 |
8335 |
8380 |
+ |
RS348 |
Unspecified |
| scaffold1435 |
8362 |
8619 |
- |
RS139 |
Unspecified |
| scaffold1435 |
8617 |
8856 |
- |
Gypsy-128_GM-I |
LTR/Gypsy |
| scaffold1435 |
9017 |
9230 |
+ |
RS7982 |
Unspecified |
| scaffold1435 |
9189 |
9312 |
- |
PL79 |
Unspecified |
| scaffold1435 |
11124 |
11163 |
+ |
GA-rich |
Low_complexity |
| scaffold1435 |
11154 |
11238 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
11454 |
11820 |
- |
RS8174 |
Unspecified |
| scaffold1435 |
11879 |
12435 |
- |
RS309 |
Unspecified |
| scaffold1435 |
11997 |
12434 |
- |
PL266 |
Unspecified |
| scaffold1435 |
12542 |
12595 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
12943 |
12966 |
+ |
(AAATT)n |
Simple_repeat |
| scaffold1435 |
13201 |
13469 |
- |
RS17600 |
Unspecified |
| scaffold1435 |
13674 |
13704 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold1435 |
14187 |
14245 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold1435 |
16339 |
16376 |
+ |
(TCAG)n |
Simple_repeat |
| scaffold1435 |
16705 |
16754 |
+ |
RS826 |
Unspecified |
| scaffold1435 |
18755 |
19087 |
+ |
PL683 |
Unspecified |
| scaffold1435 |
18967 |
19109 |
+ |
PL358 |
Unspecified |
| scaffold1435 |
20366 |
20437 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1435 |
20714 |
20913 |
+ |
RS739 |
Unspecified |
| scaffold1435 |
20915 |
21197 |
+ |
RS239 |
Unspecified |
| scaffold1435 |
21599 |
21633 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold1435 |
23155 |
23184 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
25651 |
25683 |
+ |
(A)n |
Simple_repeat |
| scaffold1435 |
26016 |
26053 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
26251 |
26280 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
26397 |
26487 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold1435 |
27552 |
27603 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
28784 |
28960 |
+ |
RS3577 |
Unspecified |
| scaffold1435 |
28988 |
29044 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
29788 |
29835 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
32785 |
32843 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
33241 |
33280 |
- |
Gypsy-120_SB-I |
LTR/Gypsy |
| scaffold1435 |
33510 |
33636 |
+ |
PL849 |
Unspecified |
| scaffold1435 |
33542 |
34137 |
- |
RS1067 |
Unspecified |
| scaffold1435 |
36041 |
36069 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
36113 |
36198 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold1435 |
36417 |
36766 |
+ |
RS3436 |
Unspecified |
| scaffold1435 |
37265 |
37303 |
+ |
(GGT)n |
Simple_repeat |
| scaffold1435 |
37317 |
37335 |
+ |
(TC)n |
Simple_repeat |
| scaffold1435 |
37337 |
37360 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
37453 |
37485 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
37577 |
37731 |
- |
RS7270 |
Unspecified |
| scaffold1435 |
40321 |
40387 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
40552 |
40601 |
+ |
(CTT)n |
Simple_repeat |
| scaffold1435 |
41035 |
41071 |
+ |
(A)n |
Simple_repeat |
| scaffold1435 |
41440 |
41641 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1435 |
41642 |
41762 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1435 |
42004 |
42059 |
- |
PL296 |
Unspecified |
| scaffold1435 |
42015 |
42784 |
+ |
PL169 |
Unspecified |
| scaffold1435 |
42782 |
42941 |
- |
PL848 |
Unspecified |
| scaffold1435 |
42943 |
42993 |
- |
PL848 |
Unspecified |
| scaffold1435 |
43101 |
43148 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
43383 |
44201 |
- |
RS633 |
Unspecified |
| scaffold1435 |
45118 |
45141 |
+ |
(ACACA)n |
Simple_repeat |
| scaffold1435 |
45397 |
45671 |
- |
RS795 |
Unspecified |
| scaffold1435 |
45962 |
45992 |
+ |
(ATAATC)n |
Simple_repeat |
| scaffold1435 |
46086 |
46144 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold1435 |
48321 |
50093 |
+ |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold1435 |
50392 |
51056 |
+ |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold1435 |
51292 |
51339 |
+ |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold1435 |
51411 |
51436 |
+ |
Copia-90_Mad-I |
LTR/Copia |
| scaffold1435 |
51437 |
51505 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold1435 |
51506 |
51532 |
+ |
Copia-90_Mad-I |
LTR/Copia |
| scaffold1435 |
51808 |
52122 |
+ |
PL827 |
Unspecified |
| scaffold1435 |
51989 |
52152 |
- |
RS7064 |
Unspecified |
| scaffold1435 |
52030 |
52332 |
+ |
RS1094 |
Unspecified |
| scaffold1435 |
52241 |
52429 |
+ |
PL827 |
Unspecified |
| scaffold1435 |
52337 |
52478 |
+ |
RS1094 |
Unspecified |
| scaffold1435 |
52717 |
52776 |
- |
RS2933 |
Unspecified |
| scaffold1435 |
52811 |
54237 |
+ |
RS824 |
Unspecified |
| scaffold1435 |
56255 |
56278 |
+ |
(ACACA)n |
Simple_repeat |
| scaffold1435 |
56534 |
56808 |
- |
RS795 |
Unspecified |
| scaffold1435 |
57099 |
57129 |
+ |
(ATAATC)n |
Simple_repeat |
| scaffold1435 |
57219 |
57279 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold1435 |
57664 |
57724 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold1435 |
58191 |
58224 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold1435 |
58644 |
58736 |
+ |
RS5306 |
Unspecified |
| scaffold1435 |
60206 |
60454 |
- |
RS4 |
Unspecified |
| scaffold1435 |
60880 |
60954 |
+ |
RS128 |
Unspecified |
| scaffold1435 |
61075 |
61131 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1435 |
61157 |
61197 |
+ |
GA-rich |
Low_complexity |
| scaffold1435 |
61198 |
61254 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
61255 |
61266 |
+ |
GA-rich |
Low_complexity |
| scaffold1435 |
61398 |
61490 |
- |
RS4475 |
Unspecified |
| scaffold1435 |
62078 |
62092 |
+ |
(TCT)n |
Simple_repeat |
| scaffold1435 |
62093 |
62128 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
62129 |
62136 |
+ |
(TCT)n |
Simple_repeat |
| scaffold1435 |
62398 |
62586 |
- |
RS4 |
Unspecified |
| scaffold1435 |
62584 |
62985 |
- |
RS2105 |
Unspecified |
| scaffold1435 |
62977 |
63053 |
- |
RS6841 |
Unspecified |
| scaffold1435 |
65796 |
66004 |
+ |
PL326 |
Unspecified |
| scaffold1435 |
72281 |
72322 |
+ |
(CAAGGCG)n |
Simple_repeat |
| scaffold1435 |
75745 |
75781 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
77198 |
77251 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold1435 |
77733 |
77777 |
+ |
(TTCAAA)n |
Simple_repeat |
| scaffold1435 |
77964 |
78001 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold1435 |
84221 |
84260 |
+ |
(TAG)n |
Simple_repeat |
| scaffold1435 |
84265 |
84284 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
88085 |
88123 |
+ |
PL296 |
Unspecified |
| scaffold1435 |
90501 |
90564 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
90989 |
91206 |
+ |
RS356 |
Unspecified |
| scaffold1435 |
92143 |
92174 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
92216 |
92331 |
+ |
RS1258 |
Unspecified |
| scaffold1435 |
94869 |
94891 |
+ |
(T)n |
Simple_repeat |
| scaffold1435 |
95018 |
95160 |
+ |
RS549 |
Unspecified |
| scaffold1435 |
96893 |
96922 |
+ |
(GCA)n |
Simple_repeat |
| scaffold1435 |
100005 |
100025 |
+ |
(AGAA)n |
Simple_repeat |
| scaffold1435 |
100284 |
100328 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
100467 |
100633 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold1435 |
100640 |
100787 |
+ |
(ATT)n |
Simple_repeat |
| scaffold1435 |
100847 |
100893 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1435 |
100910 |
101030 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold1435 |
101153 |
101229 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold1435 |
101268 |
101381 |
+ |
(A)n |
Simple_repeat |
| scaffold1435 |
101350 |
101381 |
+ |
(A)n |
Simple_repeat |
| scaffold1435 |
101743 |
101886 |
- |
RS79 |
Unspecified |
| scaffold1435 |
101810 |
101898 |
- |
RS15498 |
Unspecified |
| scaffold1435 |
102022 |
102058 |
+ |
(CGGCC)n |
Simple_repeat |
| scaffold1435 |
102462 |
102569 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
102462 |
102777 |
+ |
A-rich |
Low_complexity |
| scaffold1435 |
102524 |
102777 |
+ |
RS14228 |
Unspecified |
| scaffold1435 |
102825 |
102864 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold1435 |
103484 |
103515 |
+ |
(AGTTTT)n |
Simple_repeat |
| scaffold1435 |
103597 |
103622 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold1435 |
103839 |
103890 |
+ |
(TTTAGAA)n |
Simple_repeat |
| scaffold1435 |
104326 |
105260 |
- |
RS1208 |
Unspecified |
| scaffold1435 |
105270 |
105809 |
- |
RS228 |
Unspecified |
| scaffold1435 |
105800 |
106259 |
- |
RS228 |
Unspecified |
| scaffold1435 |
106262 |
106597 |
- |
RS228 |
Unspecified |