scaffold15109 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold15109 |
1 |
287 |
+ |
Copia-101_Mad-I |
LTR/Copia |
| scaffold15109 |
868 |
938 |
+ |
RS17 |
Unspecified |
| scaffold15109 |
4793 |
4889 |
+ |
RS4475 |
Unspecified |
| scaffold15109 |
5057 |
5085 |
+ |
(TTC)n |
Simple_repeat |
| scaffold15109 |
5560 |
5610 |
+ |
(TTGTGTT)n |
Simple_repeat |
| scaffold15109 |
5945 |
5998 |
+ |
(TTGGATA)n |
Simple_repeat |
| scaffold15109 |
7539 |
7623 |
+ |
RS86 |
Unspecified |
| scaffold15109 |
7624 |
7650 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
7863 |
7949 |
- |
tRNASAT-1_ZM |
Satellite |
| scaffold15109 |
8317 |
8370 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold15109 |
9225 |
9350 |
+ |
RS831 |
Unspecified |
| scaffold15109 |
9385 |
9533 |
- |
RS9953 |
Unspecified |
| scaffold15109 |
9765 |
9802 |
+ |
(CTT)n |
Simple_repeat |
| scaffold15109 |
9854 |
9884 |
+ |
(TCT)n |
Simple_repeat |
| scaffold15109 |
10013 |
10217 |
+ |
PL743 |
Unspecified |
| scaffold15109 |
10104 |
10273 |
+ |
(GGA)n |
Simple_repeat |
| scaffold15109 |
10255 |
10273 |
+ |
(GGA)n |
Simple_repeat |
| scaffold15109 |
10531 |
10554 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
10636 |
10679 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold15109 |
11474 |
11592 |
- |
RS172 |
Unspecified |
| scaffold15109 |
11928 |
11977 |
+ |
(TTCT)n |
Simple_repeat |
| scaffold15109 |
12247 |
12386 |
+ |
GA-rich |
Low_complexity |
| scaffold15109 |
12551 |
12773 |
- |
RS306 |
Unspecified |
| scaffold15109 |
13083 |
13355 |
- |
RS9020 |
Unspecified |
| scaffold15109 |
13812 |
13989 |
- |
RS7512 |
Unspecified |
| scaffold15109 |
13997 |
14019 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
14247 |
14289 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15109 |
14667 |
14723 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
14887 |
14915 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
15005 |
15257 |
+ |
RS2999 |
Unspecified |
| scaffold15109 |
15261 |
15283 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
15318 |
15350 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
19346 |
19400 |
+ |
(TGTATT)n |
Simple_repeat |
| scaffold15109 |
19512 |
19554 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold15109 |
20874 |
20970 |
- |
RS84 |
Unspecified |
| scaffold15109 |
21872 |
21915 |
+ |
(TTATTG)n |
Simple_repeat |
| scaffold15109 |
22002 |
22023 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
22219 |
22320 |
- |
RS1726 |
Unspecified |
| scaffold15109 |
23227 |
23297 |
+ |
(AATT)n |
Simple_repeat |
| scaffold15109 |
23367 |
23424 |
+ |
(AATATTT)n |
Simple_repeat |
| scaffold15109 |
23641 |
23884 |
- |
RS581 |
Unspecified |
| scaffold15109 |
24076 |
24535 |
+ |
PL700 |
Unspecified |
| scaffold15109 |
24535 |
24726 |
+ |
RS1095 |
Unspecified |
| scaffold15109 |
24832 |
24875 |
+ |
(TTTAACAT)n |
Simple_repeat |
| scaffold15109 |
25136 |
25169 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
25650 |
25684 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
26431 |
26453 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
26901 |
26924 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
28493 |
28685 |
- |
RS209 |
Unspecified |
| scaffold15109 |
29661 |
29735 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15109 |
29736 |
29940 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15109 |
30592 |
30773 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold15109 |
32664 |
32712 |
+ |
(ATAAC)n |
Simple_repeat |
| scaffold15109 |
37346 |
37392 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
37547 |
37692 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
37786 |
37811 |
+ |
(TTG)n |
Simple_repeat |
| scaffold15109 |
38444 |
38528 |
- |
PL289 |
Unspecified |
| scaffold15109 |
38631 |
38901 |
+ |
RS1943 |
Unspecified |
| scaffold15109 |
39376 |
39452 |
+ |
(ATATA)n |
Simple_repeat |
| scaffold15109 |
39658 |
39748 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
40370 |
40408 |
+ |
(TT)n |
Simple_repeat |
| scaffold15109 |
42179 |
42208 |
+ |
(TA)n |
Simple_repeat |
| scaffold15109 |
42420 |
42839 |
+ |
PL3 |
Unspecified |
| scaffold15109 |
42989 |
43035 |
+ |
GA-rich |
Low_complexity |
| scaffold15109 |
43528 |
43715 |
+ |
RS952 |
Unspecified |
| scaffold15109 |
45424 |
45467 |
+ |
(TCATTCAC)n |
Simple_repeat |
| scaffold15109 |
46535 |
46565 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold15109 |
46596 |
46805 |
+ |
RS164 |
Unspecified |
| scaffold15109 |
46907 |
47105 |
- |
RS6593 |
Unspecified |
| scaffold15109 |
47201 |
47228 |
+ |
(CGTGT)n |
Simple_repeat |
| scaffold15109 |
47736 |
47771 |
+ |
(TCGTG)n |
Simple_repeat |
| scaffold15109 |
47878 |
48166 |
+ |
RS1716 |
Unspecified |
| scaffold15109 |
48523 |
48544 |
+ |
(CTT)n |
Simple_repeat |
| scaffold15109 |
50409 |
50429 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
51774 |
51796 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
51797 |
51846 |
- |
RS2999 |
Unspecified |
| scaffold15109 |
51986 |
52028 |
+ |
STOWAWAY20_SB |
DNA/TcMar-Stowaway |
| scaffold15109 |
52072 |
52132 |
- |
RS2999 |
Unspecified |
| scaffold15109 |
52448 |
52467 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
52475 |
52647 |
+ |
RS7512 |
Unspecified |
| scaffold15109 |
52673 |
52697 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold15109 |
52932 |
52972 |
+ |
(TCAC)n |
Simple_repeat |
| scaffold15109 |
53081 |
53353 |
+ |
RS9020 |
Unspecified |
| scaffold15109 |
54127 |
54145 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
54283 |
54354 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
54398 |
54427 |
+ |
(AATA)n |
Simple_repeat |
| scaffold15109 |
54902 |
55284 |
+ |
RS1337 |
Unspecified |
| scaffold15109 |
55850 |
56058 |
- |
RS1 |
Unspecified |
| scaffold15109 |
56965 |
57055 |
+ |
(ATT)n |
Simple_repeat |
| scaffold15109 |
57056 |
57091 |
- |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold15109 |
57092 |
57117 |
+ |
(TTG)n |
Simple_repeat |
| scaffold15109 |
57156 |
57218 |
- |
RS1323 |
Unspecified |
| scaffold15109 |
57181 |
57273 |
- |
RS5732 |
Unspecified |
| scaffold15109 |
57789 |
57813 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
57930 |
57957 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold15109 |
58644 |
58669 |
+ |
(AAT)n |
Simple_repeat |
| scaffold15109 |
58822 |
58907 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
59082 |
59139 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
59587 |
59631 |
+ |
(TTTGAT)n |
Simple_repeat |
| scaffold15109 |
60001 |
60043 |
+ |
RS16604 |
Unspecified |
| scaffold15109 |
60328 |
60358 |
+ |
(CAA)n |
Simple_repeat |
| scaffold15109 |
60858 |
60879 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
60946 |
60983 |
+ |
(TATTTG)n |
Simple_repeat |
| scaffold15109 |
63445 |
63536 |
+ |
hAT-9_SBi |
DNA/hAT-Tag1 |
| scaffold15109 |
63967 |
64005 |
+ |
(CGTGTCC)n |
Simple_repeat |
| scaffold15109 |
64620 |
64804 |
- |
RS3756 |
Unspecified |
| scaffold15109 |
65226 |
65264 |
+ |
(TATATAA)n |
Simple_repeat |
| scaffold15109 |
65658 |
65791 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
65767 |
65791 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
66030 |
66048 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
66030 |
66372 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
66043 |
66372 |
+ |
PL3 |
Unspecified |
| scaffold15109 |
66832 |
66915 |
+ |
(CGGTGA)n |
Simple_repeat |
| scaffold15109 |
66932 |
67037 |
- |
RS3300 |
Unspecified |
| scaffold15109 |
67166 |
67190 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
67191 |
67204 |
+ |
(TTTTCTT)n |
Simple_repeat |
| scaffold15109 |
67323 |
67371 |
+ |
(TCGAGC)n |
Simple_repeat |
| scaffold15109 |
71262 |
71300 |
+ |
(TTGACT)n |
Simple_repeat |
| scaffold15109 |
74470 |
74486 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
75322 |
75404 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold15109 |
76352 |
76375 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
78810 |
78841 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
78957 |
79148 |
- |
RS1468 |
Unspecified |
| scaffold15109 |
79145 |
79328 |
- |
RS1468 |
Unspecified |
| scaffold15109 |
79392 |
79472 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold15109 |
79785 |
79821 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
79828 |
79856 |
+ |
(TAT)n |
Simple_repeat |
| scaffold15109 |
79960 |
80000 |
+ |
(TCATCTCTA)n |
Simple_repeat |
| scaffold15109 |
80106 |
80155 |
+ |
(TTATTGA)n |
Simple_repeat |
| scaffold15109 |
82764 |
82799 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
82897 |
82975 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
83219 |
83244 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
83681 |
83726 |
+ |
RS727 |
Unspecified |
| scaffold15109 |
88647 |
88685 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
90995 |
91018 |
+ |
(CTA)n |
Simple_repeat |
| scaffold15109 |
91545 |
91583 |
+ |
(AAAAAT)n |
Simple_repeat |
| scaffold15109 |
91616 |
91648 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold15109 |
91988 |
92433 |
+ |
RS370 |
Unspecified |
| scaffold15109 |
92931 |
92970 |
+ |
(TCATAC)n |
Simple_repeat |
| scaffold15109 |
93574 |
93771 |
- |
RS12310 |
Unspecified |
| scaffold15109 |
94241 |
94294 |
+ |
(ATACTC)n |
Simple_repeat |
| scaffold15109 |
94320 |
94547 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold15109 |
94842 |
94884 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
95234 |
95540 |
+ |
RS512 |
Unspecified |
| scaffold15109 |
96767 |
96791 |
+ |
(AT)n |
Simple_repeat |
| scaffold15109 |
98634 |
98702 |
+ |
(TGA)n |
Simple_repeat |
| scaffold15109 |
98780 |
99166 |
- |
RS6841 |
Unspecified |
| scaffold15109 |
99230 |
99297 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
99230 |
99732 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
99285 |
99732 |
- |
PL672 |
Unspecified |
| scaffold15109 |
99732 |
99789 |
- |
RS8 |
Unspecified |
| scaffold15109 |
100274 |
100394 |
+ |
(AAAACTTCAG)n |
Simple_repeat |
| scaffold15109 |
100491 |
100764 |
- |
RS1 |
Unspecified |
| scaffold15109 |
100834 |
100931 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15109 |
101279 |
101315 |
+ |
GA-rich |
Low_complexity |
| scaffold15109 |
101449 |
101545 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15109 |
101556 |
101562 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold15109 |
101563 |
101600 |
+ |
(TTTTATT)n |
Simple_repeat |
| scaffold15109 |
101647 |
101858 |
+ |
(ATT)n |
Simple_repeat |
| scaffold15109 |
101865 |
101946 |
- |
RS1323 |
Unspecified |
| scaffold15109 |
102226 |
102255 |
+ |
(CA)n |
Simple_repeat |
| scaffold15109 |
102710 |
103030 |
+ |
RS512 |
Unspecified |
| scaffold15109 |
104229 |
104253 |
+ |
(AT)n |
Simple_repeat |
| scaffold15109 |
106028 |
106090 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold15109 |
106361 |
106522 |
+ |
PL53 |
Unspecified |
| scaffold15109 |
106591 |
106653 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
107732 |
108191 |
- |
PL522 |
Unspecified |
| scaffold15109 |
109102 |
109411 |
+ |
PL799 |
Unspecified |
| scaffold15109 |
109726 |
109857 |
+ |
RS10154 |
Unspecified |
| scaffold15109 |
110366 |
110403 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
110530 |
110559 |
+ |
(TAA)n |
Simple_repeat |
| scaffold15109 |
110969 |
111191 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold15109 |
111429 |
111527 |
+ |
RS10664 |
Unspecified |
| scaffold15109 |
112291 |
112327 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
113096 |
113465 |
- |
Helitron5 |
RC/Helitron |
| scaffold15109 |
113158 |
113465 |
- |
Helitron5 |
RC/Helitron |
| scaffold15109 |
113526 |
113583 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
113654 |
113683 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold15109 |
113917 |
113966 |
+ |
(AAC)n |
Simple_repeat |
| scaffold15109 |
114063 |
114089 |
+ |
(CAT)n |
Simple_repeat |
| scaffold15109 |
114279 |
114423 |
- |
RS3779 |
Unspecified |
| scaffold15109 |
114595 |
114628 |
+ |
(TA)n |
Simple_repeat |
| scaffold15109 |
114727 |
114820 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
117387 |
117436 |
+ |
(TAATTTT)n |
Simple_repeat |
| scaffold15109 |
117526 |
117711 |
- |
RS4579 |
Unspecified |
| scaffold15109 |
117598 |
117792 |
+ |
RS1517 |
Unspecified |
| scaffold15109 |
117974 |
118023 |
+ |
(ATTACA)n |
Simple_repeat |
| scaffold15109 |
118939 |
119257 |
+ |
(TA)n |
Simple_repeat |
| scaffold15109 |
119258 |
119267 |
+ |
(TGAT)n |
Simple_repeat |
| scaffold15109 |
119268 |
119293 |
+ |
(ATTGAT)n |
Simple_repeat |
| scaffold15109 |
119294 |
119312 |
+ |
(TGAT)n |
Simple_repeat |
| scaffold15109 |
119740 |
119756 |
+ |
(A)n |
Simple_repeat |
| scaffold15109 |
122130 |
122164 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold15109 |
123215 |
123421 |
+ |
RS16888 |
Unspecified |
| scaffold15109 |
123414 |
123728 |
+ |
PL9 |
Unspecified |
| scaffold15109 |
123916 |
123940 |
+ |
(CTT)n |
Simple_repeat |
| scaffold15109 |
124119 |
124155 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
125853 |
126172 |
- |
RS10247 |
Unspecified |
| scaffold15109 |
130125 |
130170 |
+ |
(ATATGAA)n |
Simple_repeat |
| scaffold15109 |
132401 |
132432 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
133904 |
133924 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
134731 |
134779 |
+ |
(T)n |
Simple_repeat |
| scaffold15109 |
138277 |
138308 |
+ |
(ATGATC)n |
Simple_repeat |
| scaffold15109 |
138350 |
138377 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15109 |
138525 |
138622 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15109 |
138913 |
138966 |
+ |
A-rich |
Low_complexity |
| scaffold15109 |
139118 |
139253 |
+ |
RS2471 |
Unspecified |
| scaffold15109 |
139328 |
139884 |
+ |
PL69 |
Unspecified |
| scaffold15109 |
139940 |
140036 |
- |
RS1252 |
Unspecified |
| scaffold15109 |
140406 |
140599 |
- |
RS41 |
Unspecified |
| scaffold15109 |
141290 |
141328 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold15109 |
141652 |
142220 |
+ |
RS1275 |
Unspecified |
| scaffold15109 |
142052 |
142258 |
- |
RS8043 |
Unspecified |
| scaffold15109 |
142442 |
142470 |
+ |
(ATG)n |
Simple_repeat |
| scaffold15109 |
142821 |
142971 |
+ |
RS1296 |
Unspecified |
| scaffold15109 |
143444 |
143487 |
+ |
(TAATG)n |
Simple_repeat |
| scaffold15109 |
143648 |
143740 |
+ |
(ATG)n |
Simple_repeat |
| scaffold15109 |
143919 |
143994 |
+ |
RS1296 |
Unspecified |
| scaffold15109 |
143929 |
144093 |
- |
RS7033 |
Unspecified |