scaffold15723 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold15723 |
120 |
168 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold15723 |
146 |
172 |
+ |
(GAA)n |
Simple_repeat |
| scaffold15723 |
1908 |
1932 |
+ |
(GAT)n |
Simple_repeat |
| scaffold15723 |
2016 |
2089 |
+ |
A-rich |
Low_complexity |
| scaffold15723 |
2478 |
2828 |
+ |
RS986 |
Unspecified |
| scaffold15723 |
2829 |
3432 |
- |
RS2618 |
Unspecified |
| scaffold15723 |
3442 |
3475 |
+ |
(TAAATT)n |
Simple_repeat |
| scaffold15723 |
3806 |
3877 |
+ |
(TTCGT)n |
Simple_repeat |
| scaffold15723 |
4022 |
4081 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold15723 |
4181 |
4636 |
- |
RS4947 |
Unspecified |
| scaffold15723 |
4390 |
4673 |
+ |
RS6158 |
Unspecified |
| scaffold15723 |
4684 |
5486 |
- |
RS5726 |
Unspecified |
| scaffold15723 |
5420 |
5994 |
- |
RS1409 |
Unspecified |
| scaffold15723 |
5986 |
6298 |
- |
RS7960 |
Unspecified |
| scaffold15723 |
6407 |
6445 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold15723 |
6557 |
6584 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
7491 |
7533 |
+ |
(TATTATT)n |
Simple_repeat |
| scaffold15723 |
7675 |
7987 |
- |
RS7960 |
Unspecified |
| scaffold15723 |
7999 |
8045 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold15723 |
8097 |
8135 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold15723 |
8180 |
8472 |
+ |
RS1636 |
Unspecified |
| scaffold15723 |
8751 |
8883 |
- |
SHACOP15_LTR_MT |
LTR/Copia |
| scaffold15723 |
9054 |
9097 |
+ |
(TATTATT)n |
Simple_repeat |
| scaffold15723 |
9249 |
9284 |
+ |
(CCCAC)n |
Simple_repeat |
| scaffold15723 |
9339 |
9364 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
9618 |
9713 |
- |
RS8095 |
Unspecified |
| scaffold15723 |
10279 |
10314 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
10342 |
10678 |
- |
RS18232 |
Unspecified |
| scaffold15723 |
11212 |
11249 |
+ |
(TTTTCC)n |
Simple_repeat |
| scaffold15723 |
12589 |
12620 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold15723 |
12745 |
12904 |
+ |
(ATA)n |
Simple_repeat |
| scaffold15723 |
12907 |
12995 |
+ |
A-rich |
Low_complexity |
| scaffold15723 |
13094 |
13201 |
+ |
RS8203 |
Unspecified |
| scaffold15723 |
14244 |
14323 |
- |
RS10112 |
Unspecified |
| scaffold15723 |
15590 |
15727 |
- |
RS18232 |
Unspecified |
| scaffold15723 |
15615 |
15727 |
- |
PL477 |
Unspecified |
| scaffold15723 |
15884 |
16179 |
+ |
PL499 |
Unspecified |
| scaffold15723 |
16434 |
16490 |
+ |
Mx |
DNA/hAT-Ac |
| scaffold15723 |
16491 |
16532 |
- |
hAT-3_PTr |
DNA/hAT-Ac |
| scaffold15723 |
16736 |
16769 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
20272 |
20556 |
- |
RS13627 |
Unspecified |
| scaffold15723 |
21869 |
21969 |
- |
MARINER2_MT |
DNA/TcMar-Pogo |
| scaffold15723 |
22079 |
22348 |
- |
MARINER2_MT |
DNA/TcMar-Pogo |
| scaffold15723 |
22414 |
22526 |
- |
MARINER2_MT |
DNA/TcMar-Pogo |
| scaffold15723 |
26252 |
26280 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold15723 |
26616 |
27069 |
- |
RS283 |
Unspecified |
| scaffold15723 |
27233 |
27663 |
+ |
PL777 |
Unspecified |
| scaffold15723 |
28284 |
28312 |
+ |
(AAC)n |
Simple_repeat |
| scaffold15723 |
29276 |
29454 |
- |
RS10491 |
Unspecified |
| scaffold15723 |
29450 |
29560 |
+ |
A-rich |
Low_complexity |
| scaffold15723 |
29518 |
29560 |
+ |
A-rich |
Low_complexity |
| scaffold15723 |
29647 |
29797 |
- |
RS10491 |
Unspecified |
| scaffold15723 |
32598 |
32632 |
+ |
A-rich |
Low_complexity |
| scaffold15723 |
32888 |
33162 |
+ |
RS17600 |
Unspecified |
| scaffold15723 |
33195 |
33438 |
+ |
RS4 |
Unspecified |
| scaffold15723 |
33712 |
33756 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
33756 |
33772 |
+ |
(TCA)n |
Simple_repeat |
| scaffold15723 |
34523 |
34608 |
+ |
(TTCTC)n |
Simple_repeat |
| scaffold15723 |
34798 |
34922 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15723 |
35210 |
35326 |
+ |
RS972 |
Unspecified |
| scaffold15723 |
35638 |
35679 |
- |
Gypsy21-PTR_I-int |
LTR/Gypsy |
| scaffold15723 |
37990 |
38147 |
+ |
RS573 |
Unspecified |
| scaffold15723 |
38074 |
38168 |
+ |
RS333 |
Unspecified |
| scaffold15723 |
39369 |
39391 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
39636 |
40171 |
- |
PL753 |
Unspecified |
| scaffold15723 |
40165 |
40269 |
- |
RS4475 |
Unspecified |
| scaffold15723 |
40727 |
40991 |
+ |
RS17600 |
Unspecified |
| scaffold15723 |
40858 |
41028 |
+ |
RS10261 |
Unspecified |
| scaffold15723 |
41031 |
41173 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
41138 |
41173 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
41344 |
41391 |
+ |
PL679 |
Unspecified |
| scaffold15723 |
41366 |
41671 |
+ |
RS724 |
Unspecified |
| scaffold15723 |
43462 |
43480 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
44103 |
44157 |
+ |
(TTCT)n |
Simple_repeat |
| scaffold15723 |
44486 |
44541 |
+ |
CACTA_LP |
DNA/CMC-EnSpm |
| scaffold15723 |
44543 |
44581 |
+ |
(AATGAG)n |
Simple_repeat |
| scaffold15723 |
44591 |
45031 |
- |
RS1922 |
Unspecified |
| scaffold15723 |
45517 |
45571 |
+ |
(TTACATTT)n |
Simple_repeat |
| scaffold15723 |
47249 |
47275 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold15723 |
49324 |
49534 |
+ |
PL517 |
Unspecified |
| scaffold15723 |
49351 |
49564 |
- |
RS13085 |
Unspecified |
| scaffold15723 |
50960 |
51066 |
+ |
RS13929 |
Unspecified |
| scaffold15723 |
50972 |
51079 |
- |
RS16911 |
Unspecified |
| scaffold15723 |
51648 |
51790 |
+ |
RS18 |
Unspecified |
| scaffold15723 |
52639 |
52745 |
+ |
RS13929 |
Unspecified |
| scaffold15723 |
52651 |
52758 |
- |
RS16911 |
Unspecified |
| scaffold15723 |
54812 |
54833 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
55126 |
55169 |
+ |
(ATCAAT)n |
Simple_repeat |
| scaffold15723 |
55494 |
55742 |
- |
RS614 |
Unspecified |
| scaffold15723 |
55737 |
55931 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15723 |
55932 |
56032 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15723 |
55932 |
56003 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15723 |
55999 |
56032 |
- |
RS614 |
Unspecified |
| scaffold15723 |
56427 |
56448 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
56741 |
56784 |
+ |
(ATCAAT)n |
Simple_repeat |
| scaffold15723 |
57109 |
57357 |
- |
RS614 |
Unspecified |
| scaffold15723 |
57352 |
57546 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15723 |
57547 |
57618 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15723 |
57614 |
57726 |
- |
RS223 |
Unspecified |
| scaffold15723 |
57616 |
57741 |
+ |
PL6 |
Unspecified |
| scaffold15723 |
57899 |
58330 |
+ |
RS338 |
Unspecified |
| scaffold15723 |
58559 |
59388 |
- |
Copia-50_SB-I |
LTR/Copia |
| scaffold15723 |
61367 |
61565 |
+ |
PL272 |
Unspecified |
| scaffold15723 |
62043 |
62059 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
62176 |
62407 |
- |
RS267 |
Unspecified |
| scaffold15723 |
63078 |
63284 |
+ |
RS221 |
Unspecified |
| scaffold15723 |
63552 |
63791 |
- |
RS16888 |
Unspecified |
| scaffold15723 |
64134 |
64375 |
- |
RS4 |
Unspecified |
| scaffold15723 |
64480 |
64561 |
+ |
RS221 |
Unspecified |
| scaffold15723 |
65124 |
65141 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
70722 |
70787 |
+ |
RS18024 |
Unspecified |
| scaffold15723 |
70905 |
70968 |
+ |
(TAT)n |
Simple_repeat |
| scaffold15723 |
71097 |
71142 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
71346 |
71390 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold15723 |
72134 |
72168 |
+ |
(ATA)n |
Simple_repeat |
| scaffold15723 |
72486 |
72537 |
+ |
(ATT)n |
Simple_repeat |
| scaffold15723 |
72566 |
72601 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15723 |
72608 |
72664 |
- |
RS1323 |
Unspecified |
| scaffold15723 |
72930 |
73054 |
- |
RS13542 |
Unspecified |
| scaffold15723 |
72952 |
73288 |
+ |
RS2543 |
Unspecified |
| scaffold15723 |
73341 |
73398 |
+ |
A-rich |
Low_complexity |
| scaffold15723 |
75714 |
75754 |
+ |
(TAT)n |
Simple_repeat |
| scaffold15723 |
76438 |
76479 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
76714 |
76783 |
+ |
RS53 |
Unspecified |
| scaffold15723 |
77553 |
77614 |
+ |
(GGTGAG)n |
Simple_repeat |
| scaffold15723 |
77737 |
77850 |
+ |
(TGG)n |
Simple_repeat |
| scaffold15723 |
77904 |
77921 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
78065 |
78108 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15723 |
78209 |
78329 |
- |
RS12153 |
Unspecified |
| scaffold15723 |
78390 |
78534 |
- |
RS325 |
Unspecified |
| scaffold15723 |
80718 |
80749 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
82542 |
82576 |
+ |
(TAT)n |
Simple_repeat |
| scaffold15723 |
83336 |
83366 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
83487 |
83525 |
+ |
(ATTAGTG)n |
Simple_repeat |
| scaffold15723 |
83740 |
83911 |
- |
RS620 |
Unspecified |
| scaffold15723 |
89640 |
89673 |
+ |
(CGG)n |
Simple_repeat |
| scaffold15723 |
89824 |
89844 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
89841 |
89880 |
+ |
G-rich |
Low_complexity |
| scaffold15723 |
89845 |
89887 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold15723 |
90586 |
90614 |
+ |
(T)n |
Simple_repeat |
| scaffold15723 |
90621 |
90648 |
+ |
(GA)n |
Simple_repeat |
| scaffold15723 |
90844 |
90939 |
- |
RS18 |
Unspecified |
| scaffold15723 |
91703 |
92158 |
- |
PL385 |
Unspecified |
| scaffold15723 |
91905 |
92196 |
- |
RS3097 |
Unspecified |
| scaffold15723 |
95370 |
95437 |
+ |
(TGA)n |
Simple_repeat |
| scaffold15723 |
98342 |
98392 |
+ |
GA-rich |
Low_complexity |
| scaffold15723 |
99505 |
99555 |
- |
PL675 |
Unspecified |
| scaffold15723 |
99664 |
99754 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold15723 |
99835 |
101341 |
- |
Copia-6_PD-I |
LTR/Copia |
| scaffold15723 |
101414 |
101538 |
+ |
RS15088 |
Unspecified |
| scaffold15723 |
101701 |
102585 |
- |
Copia-6_PD-I |
LTR/Copia |
| scaffold15723 |
103029 |
103075 |
- |
Copia-6_PD-I |
LTR/Copia |
| scaffold15723 |
103322 |
104128 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold15723 |
104204 |
104488 |
+ |
RS2706 |
Unspecified |
| scaffold15723 |
104512 |
104602 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold15723 |
104702 |
104742 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold15723 |
105878 |
106183 |
+ |
RS1452 |
Unspecified |
| scaffold15723 |
106163 |
106424 |
- |
RS1221 |
Unspecified |
| scaffold15723 |
107238 |
107274 |
+ |
GA-rich |
Low_complexity |
| scaffold15723 |
109747 |
109846 |
+ |
RS12668 |
Unspecified |
| scaffold15723 |
109959 |
110099 |
+ |
RS12543 |
Unspecified |
| scaffold15723 |
110301 |
110331 |
+ |
(TTCTTT)n |
Simple_repeat |
| scaffold15723 |
110569 |
110690 |
- |
RS13542 |
Unspecified |
| scaffold15723 |
110737 |
110824 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold15723 |
110838 |
110896 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
111597 |
111707 |
- |
PL688 |
Unspecified |
| scaffold15723 |
111603 |
111722 |
+ |
PL276 |
Unspecified |
| scaffold15723 |
112261 |
112302 |
+ |
(TGG)n |
Simple_repeat |
| scaffold15723 |
112460 |
112520 |
+ |
(AATC)n |
Simple_repeat |
| scaffold15723 |
112569 |
112626 |
+ |
RS15470 |
Unspecified |
| scaffold15723 |
112988 |
113115 |
+ |
RS193 |
Unspecified |
| scaffold15723 |
113110 |
113368 |
- |
RS1 |
Unspecified |
| scaffold15723 |
113274 |
113381 |
+ |
RS16358 |
Unspecified |
| scaffold15723 |
113367 |
113488 |
+ |
RS193 |
Unspecified |
| scaffold15723 |
113718 |
113769 |
+ |
(AGATGA)n |
Simple_repeat |
| scaffold15723 |
113770 |
113802 |
+ |
(TGA)n |
Simple_repeat |
| scaffold15723 |
113803 |
113812 |
+ |
(AGATGA)n |
Simple_repeat |
| scaffold15723 |
115750 |
115981 |
+ |
RS9726 |
Unspecified |
| scaffold15723 |
116027 |
116167 |
+ |
RS10793 |
Unspecified |
| scaffold15723 |
118667 |
118766 |
+ |
RS12668 |
Unspecified |
| scaffold15723 |
118878 |
119018 |
+ |
RS12543 |
Unspecified |
| scaffold15723 |
119245 |
119286 |
+ |
RS3146 |
Unspecified |
| scaffold15723 |
119273 |
119386 |
+ |
RS3146 |
Unspecified |
| scaffold15723 |
119709 |
119857 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
119821 |
119857 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
119978 |
120381 |
+ |
PL307 |
Unspecified |
| scaffold15723 |
120328 |
120392 |
+ |
RS13022 |
Unspecified |
| scaffold15723 |
120356 |
120410 |
- |
PL48 |
Unspecified |
| scaffold15723 |
120360 |
120408 |
- |
RS71 |
Unspecified |
| scaffold15723 |
121162 |
121306 |
+ |
RS2038 |
Unspecified |
| scaffold15723 |
121386 |
121409 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15723 |
121875 |
121915 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
126129 |
126157 |
+ |
(A)n |
Simple_repeat |
| scaffold15723 |
131144 |
131185 |
+ |
(CGG)n |
Simple_repeat |
| scaffold15723 |
131222 |
131259 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold15723 |
131284 |
131316 |
+ |
(GATAT)n |
Simple_repeat |
| scaffold15723 |
131615 |
131665 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15723 |
131665 |
131777 |
- |
RS989 |
Unspecified |
| scaffold15723 |
133375 |
133440 |
+ |
RS529 |
Unspecified |
| scaffold15723 |
133560 |
133616 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold15723 |
133619 |
133814 |
+ |
RS5266 |
Unspecified |
| scaffold15723 |
133783 |
133932 |
+ |
RS5266 |
Unspecified |
| scaffold15723 |
133985 |
134056 |
+ |
(AGTAGA)n |
Simple_repeat |
| scaffold15723 |
134220 |
134254 |
+ |
(GAGAAC)n |
Simple_repeat |
| scaffold15723 |
134419 |
134549 |
+ |
RS7966 |
Unspecified |
| scaffold15723 |
134536 |
134806 |
- |
RS10410 |
Unspecified |
| scaffold15723 |
134848 |
135049 |
- |
RS4339 |
Unspecified |
| scaffold15723 |
135286 |
135314 |
+ |
(AAC)n |
Simple_repeat |
| scaffold15723 |
135493 |
135548 |
+ |
(ATT)n |
Simple_repeat |
| scaffold15723 |
136523 |
136552 |
+ |
(TA)n |
Simple_repeat |
| scaffold15723 |
136827 |
137029 |
- |
RS4339 |
Unspecified |
| scaffold15723 |
137217 |
137245 |
+ |
(AAC)n |
Simple_repeat |
| scaffold15723 |
138306 |
138659 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold15723 |
139895 |
139929 |
+ |
(GAA)n |
Simple_repeat |
| scaffold15723 |
140150 |
140899 |
- |
RS5930 |
Unspecified |