scaffold16489 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold16489 |
16 |
60 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold16489 |
469 |
744 |
- |
RS469 |
Unspecified |
| scaffold16489 |
808 |
884 |
+ |
RS12244 |
Unspecified |
| scaffold16489 |
1698 |
1731 |
+ |
(TGATTC)n |
Simple_repeat |
| scaffold16489 |
2149 |
2288 |
- |
RS11837 |
Unspecified |
| scaffold16489 |
3931 |
4053 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
5747 |
5851 |
+ |
MuDR-N1_ZM |
DNA/MULE-MuDR |
| scaffold16489 |
5989 |
6101 |
+ |
MuDR-N1_ZM |
DNA/MULE-MuDR |
| scaffold16489 |
6200 |
6366 |
+ |
(TTA)n |
Simple_repeat |
| scaffold16489 |
6222 |
6326 |
- |
PL536 |
Unspecified |
| scaffold16489 |
6328 |
6366 |
+ |
(TTA)n |
Simple_repeat |
| scaffold16489 |
9007 |
9103 |
+ |
(AATCA)n |
Simple_repeat |
| scaffold16489 |
9152 |
9173 |
+ |
(AAAC)n |
Simple_repeat |
| scaffold16489 |
10087 |
10209 |
+ |
(AATCA)n |
Simple_repeat |
| scaffold16489 |
12123 |
12290 |
- |
RS3972 |
Unspecified |
| scaffold16489 |
15118 |
15390 |
- |
RS2779 |
Unspecified |
| scaffold16489 |
15810 |
16063 |
- |
RS10789 |
Unspecified |
| scaffold16489 |
16385 |
16409 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold16489 |
16385 |
16531 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold16489 |
16403 |
16531 |
- |
RS12902 |
Unspecified |
| scaffold16489 |
16616 |
16848 |
- |
RS365 |
Unspecified |
| scaffold16489 |
16887 |
17080 |
- |
PL2 |
Unspecified |
| scaffold16489 |
17078 |
17395 |
- |
PL2 |
Unspecified |
| scaffold16489 |
18127 |
18294 |
- |
RS3972 |
Unspecified |
| scaffold16489 |
20336 |
20397 |
+ |
(TCTTCC)n |
Simple_repeat |
| scaffold16489 |
20957 |
21080 |
- |
RS2779 |
Unspecified |
| scaffold16489 |
21450 |
21617 |
- |
RS3972 |
Unspecified |
| scaffold16489 |
23068 |
23093 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold16489 |
23271 |
23306 |
+ |
(A)n |
Simple_repeat |
| scaffold16489 |
23963 |
24235 |
- |
RS2779 |
Unspecified |
| scaffold16489 |
24790 |
24841 |
+ |
PL517 |
Unspecified |
| scaffold16489 |
24908 |
25082 |
- |
RS371 |
Unspecified |
| scaffold16489 |
25988 |
26174 |
- |
RS12651 |
Unspecified |
| scaffold16489 |
26550 |
26615 |
- |
PL859 |
Unspecified |
| scaffold16489 |
27007 |
27246 |
- |
RS325 |
Unspecified |
| scaffold16489 |
27257 |
27363 |
+ |
RS4160 |
Unspecified |
| scaffold16489 |
27929 |
27975 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
28532 |
28578 |
- |
RS8550 |
Unspecified |
| scaffold16489 |
28584 |
28871 |
+ |
RS458 |
Unspecified |
| scaffold16489 |
29016 |
29153 |
+ |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold16489 |
29237 |
29539 |
+ |
RS35 |
Unspecified |
| scaffold16489 |
29749 |
29864 |
+ |
RS4361 |
Unspecified |
| scaffold16489 |
30118 |
30157 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
30860 |
30906 |
+ |
(AATGGTT)n |
Simple_repeat |
| scaffold16489 |
34466 |
34598 |
+ |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold16489 |
36001 |
36039 |
+ |
(A)n |
Simple_repeat |
| scaffold16489 |
36824 |
36911 |
+ |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold16489 |
37449 |
37470 |
+ |
(T)n |
Simple_repeat |
| scaffold16489 |
37469 |
37507 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold16489 |
37751 |
37791 |
+ |
(GGTCT)n |
Simple_repeat |
| scaffold16489 |
37834 |
37919 |
+ |
(TTA)n |
Simple_repeat |
| scaffold16489 |
38012 |
38140 |
+ |
RS9351 |
Unspecified |
| scaffold16489 |
38099 |
38145 |
+ |
PL375 |
Unspecified |
| scaffold16489 |
38692 |
38848 |
+ |
RS35 |
Unspecified |
| scaffold16489 |
38846 |
38960 |
- |
RS1 |
Unspecified |
| scaffold16489 |
39691 |
39708 |
+ |
(A)n |
Simple_repeat |
| scaffold16489 |
40022 |
40175 |
- |
RS38 |
Unspecified |
| scaffold16489 |
40546 |
40810 |
- |
RS356 |
Unspecified |
| scaffold16489 |
40870 |
41025 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold16489 |
41024 |
41285 |
+ |
RS365 |
Unspecified |
| scaffold16489 |
41543 |
41675 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold16489 |
41902 |
41960 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
42358 |
42391 |
+ |
(T)n |
Simple_repeat |
| scaffold16489 |
42719 |
42851 |
- |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold16489 |
42758 |
42872 |
- |
RTE-1B_Mad |
LINE/RTE-BovB |
| scaffold16489 |
42997 |
43082 |
- |
PL701 |
Unspecified |
| scaffold16489 |
43174 |
43389 |
- |
RS18 |
Unspecified |
| scaffold16489 |
43543 |
43598 |
+ |
(TATT)n |
Simple_repeat |
| scaffold16489 |
43805 |
43944 |
+ |
RS620 |
Unspecified |
| scaffold16489 |
44409 |
44457 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold16489 |
44593 |
44621 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
44622 |
44645 |
+ |
(A)n |
Simple_repeat |
| scaffold16489 |
46247 |
46275 |
+ |
(T)n |
Simple_repeat |
| scaffold16489 |
46767 |
46836 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
47764 |
47802 |
+ |
(AATA)n |
Simple_repeat |
| scaffold16489 |
48250 |
48431 |
+ |
RS79 |
Unspecified |
| scaffold16489 |
48858 |
48884 |
+ |
(ATCTA)n |
Simple_repeat |
| scaffold16489 |
50328 |
50484 |
+ |
RS5 |
Unspecified |
| scaffold16489 |
52472 |
52534 |
- |
SINE2-1_STu |
SINE/tRNA |
| scaffold16489 |
52847 |
52871 |
+ |
(AT)n |
Simple_repeat |
| scaffold16489 |
53277 |
53306 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold16489 |
53354 |
53377 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold16489 |
53521 |
53761 |
- |
RS445 |
Unspecified |
| scaffold16489 |
54156 |
54249 |
+ |
RS16382 |
Unspecified |
| scaffold16489 |
56968 |
57053 |
+ |
(T)n |
Simple_repeat |
| scaffold16489 |
57164 |
57269 |
+ |
RS1781 |
Unspecified |
| scaffold16489 |
57335 |
57366 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
57475 |
57864 |
+ |
RS1781 |
Unspecified |
| scaffold16489 |
57698 |
58067 |
+ |
PL757 |
Unspecified |
| scaffold16489 |
57790 |
58112 |
+ |
RS1716 |
Unspecified |
| scaffold16489 |
58116 |
58225 |
- |
RS4 |
Unspecified |
| scaffold16489 |
64174 |
64230 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold16489 |
64265 |
64451 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold16489 |
64516 |
64541 |
+ |
(A)n |
Simple_repeat |
| scaffold16489 |
65067 |
65142 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
65156 |
65255 |
+ |
RS250 |
Unspecified |
| scaffold16489 |
65262 |
65568 |
+ |
RS1746 |
Unspecified |
| scaffold16489 |
65640 |
65657 |
+ |
(T)n |
Simple_repeat |
| scaffold16489 |
65694 |
65875 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold16489 |
66349 |
66431 |
- |
RS5081 |
Unspecified |
| scaffold16489 |
66898 |
66946 |
+ |
(TAA)n |
Simple_repeat |
| scaffold16489 |
66959 |
67193 |
- |
RS4 |
Unspecified |
| scaffold16489 |
67603 |
67635 |
+ |
(TATT)n |
Simple_repeat |
| scaffold16489 |
67997 |
68030 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold16489 |
68213 |
68242 |
+ |
(ATCAATA)n |
Simple_repeat |
| scaffold16489 |
68250 |
68368 |
+ |
(AAT)n |
Simple_repeat |
| scaffold16489 |
68370 |
68422 |
+ |
MuDR-5_ZM |
DNA/MULE-MuDR |
| scaffold16489 |
69512 |
69605 |
+ |
ATRAN |
DNA? |
| scaffold16489 |
70004 |
70052 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold16489 |
71285 |
71309 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold16489 |
71685 |
71783 |
+ |
A-rich |
Low_complexity |
| scaffold16489 |
72367 |
72420 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold16489 |
72697 |
72715 |
+ |
(ATA)n |
Simple_repeat |
| scaffold16489 |
72754 |
72812 |
+ |
RS18111 |
Unspecified |
| scaffold16489 |
72763 |
72865 |
- |
RS16382 |
Unspecified |
| scaffold16489 |
72777 |
72876 |
- |
PL436 |
Unspecified |
| scaffold16489 |
75195 |
75420 |
+ |
RS145 |
Unspecified |