scaffold18546 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold18546 |
226 |
386 |
+ |
RS8413 |
Unspecified |
| scaffold18546 |
434 |
548 |
+ |
RS4179 |
Unspecified |
| scaffold18546 |
778 |
907 |
+ |
RS4179 |
Unspecified |
| scaffold18546 |
962 |
1040 |
+ |
RS4179 |
Unspecified |
| scaffold18546 |
1189 |
1260 |
+ |
RS4179 |
Unspecified |
| scaffold18546 |
1779 |
2655 |
+ |
MuDR3_ZM |
DNA/MULE-MuDR |
| scaffold18546 |
3272 |
3432 |
+ |
PL57 |
Unspecified |
| scaffold18546 |
3448 |
3542 |
+ |
(ATTTCT)n |
Simple_repeat |
| scaffold18546 |
4671 |
4744 |
- |
RS287 |
Unspecified |
| scaffold18546 |
4847 |
4908 |
+ |
RS287 |
Unspecified |
| scaffold18546 |
4902 |
4987 |
- |
HELITRON7_OS |
RC/Helitron |
| scaffold18546 |
5100 |
5142 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold18546 |
5378 |
5432 |
+ |
(TA)n |
Simple_repeat |
| scaffold18546 |
5803 |
5869 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
6044 |
6098 |
+ |
(TA)n |
Simple_repeat |
| scaffold18546 |
6469 |
6541 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
6692 |
6757 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold18546 |
7634 |
7683 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
7958 |
8035 |
+ |
(TAACACA)n |
Simple_repeat |
| scaffold18546 |
8079 |
8130 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
10123 |
10176 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold18546 |
11216 |
11253 |
+ |
(AAATCA)n |
Simple_repeat |
| scaffold18546 |
11397 |
11473 |
+ |
GA-rich |
Low_complexity |
| scaffold18546 |
13040 |
13090 |
+ |
(TATATG)n |
Simple_repeat |
| scaffold18546 |
13349 |
13382 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
14537 |
14611 |
+ |
RS4179 |
Unspecified |
| scaffold18546 |
14872 |
14899 |
+ |
(AATA)n |
Simple_repeat |
| scaffold18546 |
20284 |
20963 |
+ |
(TA)n |
Simple_repeat |
| scaffold18546 |
20284 |
20345 |
+ |
(TA)n |
Simple_repeat |
| scaffold18546 |
20329 |
20963 |
+ |
RS608 |
Unspecified |
| scaffold18546 |
20827 |
20994 |
+ |
RS17814 |
Unspecified |
| scaffold18546 |
21006 |
21031 |
+ |
(ATA)n |
Simple_repeat |
| scaffold18546 |
21865 |
22282 |
+ |
PL866 |
Unspecified |
| scaffold18546 |
22301 |
22388 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold18546 |
27292 |
27319 |
+ |
(AAT)n |
Simple_repeat |
| scaffold18546 |
27577 |
27671 |
+ |
(AAT)n |
Simple_repeat |
| scaffold18546 |
27692 |
28300 |
+ |
RS8003 |
Unspecified |
| scaffold18546 |
28324 |
28526 |
+ |
RS1488 |
Unspecified |
| scaffold18546 |
28523 |
28842 |
+ |
PL683 |
Unspecified |
| scaffold18546 |
28733 |
28855 |
+ |
PL358 |
Unspecified |
| scaffold18546 |
28893 |
30185 |
- |
RS1556 |
Unspecified |
| scaffold18546 |
30164 |
30200 |
+ |
RS3791 |
Unspecified |
| scaffold18546 |
30184 |
30259 |
+ |
RS12235 |
Unspecified |
| scaffold18546 |
30259 |
30285 |
+ |
(ACA)n |
Simple_repeat |
| scaffold18546 |
30295 |
30526 |
+ |
RS8003 |
Unspecified |
| scaffold18546 |
30523 |
30616 |
- |
RS5215 |
Unspecified |
| scaffold18546 |
30617 |
30714 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
31080 |
31608 |
- |
PL753 |
Unspecified |
| scaffold18546 |
31838 |
31877 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
32577 |
32602 |
+ |
(AGTG)n |
Simple_repeat |
| scaffold18546 |
35655 |
35690 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
36843 |
37114 |
+ |
RS17600 |
Unspecified |
| scaffold18546 |
38013 |
38037 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold18546 |
38825 |
38855 |
- |
PL371 |
Unspecified |
| scaffold18546 |
41474 |
41502 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold18546 |
41787 |
41859 |
+ |
(TTCAGATAAC)n |
Simple_repeat |
| scaffold18546 |
41891 |
42319 |
- |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold18546 |
42158 |
42362 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold18546 |
42618 |
42675 |
+ |
(AATAAT)n |
Simple_repeat |
| scaffold18546 |
42682 |
42775 |
+ |
(AAAACTTCAG)n |
Simple_repeat |
| scaffold18546 |
43106 |
43247 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold18546 |
43406 |
43535 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold18546 |
44610 |
44680 |
- |
Gypsy-4_BD-LTR |
LTR/Gypsy |
| scaffold18546 |
45457 |
45479 |
+ |
(A)n |
Simple_repeat |
| scaffold18546 |
45527 |
45598 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
46022 |
46046 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
47026 |
47080 |
- |
RS79 |
Unspecified |
| scaffold18546 |
48333 |
48382 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold18546 |
48684 |
48728 |
- |
RS79 |
Unspecified |
| scaffold18546 |
49428 |
49462 |
+ |
(TGACCC)n |
Simple_repeat |
| scaffold18546 |
52492 |
52516 |
+ |
(ATT)n |
Simple_repeat |
| scaffold18546 |
53094 |
53169 |
+ |
(GTTTT)n |
Simple_repeat |
| scaffold18546 |
53321 |
53380 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
53549 |
53643 |
- |
RS4475 |
Unspecified |
| scaffold18546 |
53559 |
53665 |
+ |
RS16836 |
Unspecified |
| scaffold18546 |
53685 |
53731 |
+ |
(A)n |
Simple_repeat |
| scaffold18546 |
53885 |
53923 |
+ |
(TTGTGTG)n |
Simple_repeat |
| scaffold18546 |
54316 |
54335 |
+ |
(A)n |
Simple_repeat |
| scaffold18546 |
54405 |
54517 |
+ |
RS18 |
Unspecified |
| scaffold18546 |
54458 |
54569 |
+ |
RS9481 |
Unspecified |
| scaffold18546 |
54642 |
54681 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
54880 |
54919 |
+ |
(ATGTT)n |
Simple_repeat |
| scaffold18546 |
55391 |
55412 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
55599 |
55742 |
- |
RS586 |
Unspecified |
| scaffold18546 |
55951 |
55980 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
56663 |
56848 |
+ |
RS38 |
Unspecified |
| scaffold18546 |
57569 |
57659 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold18546 |
57660 |
57870 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold18546 |
58439 |
58621 |
- |
RS549 |
Unspecified |
| scaffold18546 |
58621 |
58914 |
- |
PL582 |
Unspecified |
| scaffold18546 |
58940 |
59208 |
+ |
RS234 |
Unspecified |
| scaffold18546 |
60388 |
60410 |
+ |
(GA)n |
Simple_repeat |
| scaffold18546 |
61176 |
61232 |
- |
RS640 |
Unspecified |
| scaffold18546 |
61317 |
61343 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
63507 |
63556 |
+ |
(ACCCAT)n |
Simple_repeat |
| scaffold18546 |
63887 |
63961 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold18546 |
65088 |
65108 |
+ |
(CAA)n |
Simple_repeat |
| scaffold18546 |
70546 |
70597 |
+ |
(TTATTTA)n |
Simple_repeat |
| scaffold18546 |
70752 |
70923 |
+ |
RS79 |
Unspecified |
| scaffold18546 |
73486 |
73541 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
73571 |
73655 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold18546 |
73615 |
73643 |
+ |
(A)n |
Simple_repeat |
| scaffold18546 |
73644 |
73668 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
73693 |
73720 |
+ |
(AGTG)n |
Simple_repeat |
| scaffold18546 |
73918 |
74570 |
- |
PL265 |
Unspecified |
| scaffold18546 |
74484 |
74582 |
+ |
PL103 |
Unspecified |
| scaffold18546 |
74582 |
74616 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold18546 |
75334 |
75585 |
- |
RS909 |
Unspecified |
| scaffold18546 |
75438 |
75624 |
- |
RS1019 |
Unspecified |
| scaffold18546 |
75769 |
76333 |
+ |
Copia-1_ST-I |
LTR/Copia |
| scaffold18546 |
77020 |
77274 |
+ |
Copia-1_ST-I |
LTR/Copia |
| scaffold18546 |
77352 |
78280 |
+ |
Copia-1_ST-I |
LTR/Copia |
| scaffold18546 |
78350 |
78401 |
+ |
(CCTGCA)n |
Simple_repeat |
| scaffold18546 |
78631 |
80170 |
+ |
Copia-1_ST-I |
LTR/Copia |
| scaffold18546 |
80166 |
80417 |
- |
RS909 |
Unspecified |
| scaffold18546 |
81789 |
81817 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold18546 |
81834 |
81863 |
+ |
(GTA)n |
Simple_repeat |
| scaffold18546 |
81834 |
81972 |
+ |
(GTA)n |
Simple_repeat |
| scaffold18546 |
81851 |
81972 |
+ |
RS18025 |
Unspecified |
| scaffold18546 |
82578 |
82617 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
82791 |
82823 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold18546 |
83065 |
83150 |
+ |
(GGTCG)n |
Simple_repeat |
| scaffold18546 |
83554 |
83688 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
83730 |
83754 |
+ |
(CCGGGT)n |
Simple_repeat |
| scaffold18546 |
83886 |
83937 |
+ |
(GGTCCG)n |
Simple_repeat |
| scaffold18546 |
84226 |
84246 |
+ |
(ATT)n |
Simple_repeat |
| scaffold18546 |
84656 |
84687 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
84915 |
84957 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
85654 |
86065 |
- |
PL142 |
Unspecified |
| scaffold18546 |
86104 |
86144 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold18546 |
87063 |
87426 |
- |
PL376 |
Unspecified |
| scaffold18546 |
88785 |
89054 |
+ |
RS271 |
Unspecified |
| scaffold18546 |
89063 |
89864 |
- |
RS90 |
Unspecified |
| scaffold18546 |
89922 |
89970 |
+ |
GA-rich |
Low_complexity |
| scaffold18546 |
90487 |
90575 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold18546 |
90597 |
90630 |
+ |
(TAT)n |
Simple_repeat |
| scaffold18546 |
90631 |
90656 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
90991 |
91081 |
+ |
(TTA)n |
Simple_repeat |
| scaffold18546 |
91099 |
91124 |
+ |
(AAT)n |
Simple_repeat |
| scaffold18546 |
91124 |
91229 |
+ |
RS1722 |
Unspecified |
| scaffold18546 |
91268 |
91284 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
91325 |
91390 |
+ |
(CCACCT)n |
Simple_repeat |
| scaffold18546 |
91522 |
91596 |
+ |
(AAC)n |
Simple_repeat |
| scaffold18546 |
91785 |
91967 |
+ |
RS11197 |
Unspecified |
| scaffold18546 |
91971 |
92002 |
+ |
(T)n |
Simple_repeat |
| scaffold18546 |
92101 |
92292 |
+ |
RS2803 |
Unspecified |
| scaffold18546 |
92292 |
92350 |
+ |
(TAA)n |
Simple_repeat |
| scaffold18546 |
92376 |
92432 |
+ |
(AACTGAATTG)n |
Simple_repeat |
| scaffold18546 |
92622 |
92700 |
+ |
(TTTTCA)n |
Simple_repeat |
| scaffold18546 |
92713 |
92758 |
+ |
(TACTTC)n |
Simple_repeat |
| scaffold18546 |
92902 |
92954 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold18546 |
93290 |
93346 |
+ |
(TTCTTC)n |
Simple_repeat |
| scaffold18546 |
94152 |
94186 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold18546 |
94516 |
94586 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold18546 |
94587 |
94800 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold18546 |
94801 |
94929 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold18546 |
94930 |
94981 |
- |
RS16604 |
Unspecified |
| scaffold18546 |
94972 |
95154 |
- |
RS10 |
Unspecified |
| scaffold18546 |
96232 |
96286 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
96746 |
96779 |
+ |
(ATATCTA)n |
Simple_repeat |
| scaffold18546 |
96847 |
96920 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold18546 |
97204 |
97643 |
- |
PL169 |
Unspecified |
| scaffold18546 |
98098 |
98175 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold18546 |
98582 |
98667 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold18546 |
98724 |
99488 |
+ |
PL746 |
Unspecified |
| scaffold18546 |
98727 |
99638 |
+ |
PL877 |
Unspecified |
| scaffold18546 |
99903 |
99927 |
+ |
(A)n |
Simple_repeat |
| scaffold18546 |
100123 |
100173 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold18546 |
100363 |
101267 |
+ |
RS51 |
Unspecified |
| scaffold18546 |
101257 |
102015 |
- |
PL956 |
Unspecified |
| scaffold18546 |
102972 |
103445 |
+ |
GA-rich |
Low_complexity |
| scaffold18546 |
102972 |
103009 |
+ |
GA-rich |
Low_complexity |
| scaffold18546 |
103000 |
103445 |
+ |
PL947 |
Unspecified |
| scaffold18546 |
103672 |
103767 |
+ |
Gypsy-133_GM-I |
LTR/Gypsy |
| scaffold18546 |
104653 |
104729 |
+ |
A-rich |
Low_complexity |
| scaffold18546 |
104822 |
105332 |
+ |
Gypsy-133_GM-I |
LTR/Gypsy |
| scaffold18546 |
105496 |
106672 |
+ |
OGRE-I_PS |
LTR/Gypsy |
| scaffold18546 |
107182 |
108195 |
+ |
Gypsy-23_VV-I |
LTR/Gypsy |