scaffold19333 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold19333 |
1 |
332 |
- |
RS446 |
Unspecified |
| scaffold19333 |
332 |
534 |
+ |
PL945 |
Unspecified |
| scaffold19333 |
1565 |
1834 |
- |
RS695 |
Unspecified |
| scaffold19333 |
1633 |
1844 |
- |
PL219 |
Unspecified |
| scaffold19333 |
3707 |
3752 |
+ |
(TGTGTA)n |
Simple_repeat |
| scaffold19333 |
3897 |
4178 |
+ |
RS4776 |
Unspecified |
| scaffold19333 |
4231 |
5291 |
- |
RS488 |
Unspecified |
| scaffold19333 |
5792 |
6064 |
+ |
RS1833 |
Unspecified |
| scaffold19333 |
5817 |
6110 |
+ |
RS4674 |
Unspecified |
| scaffold19333 |
6122 |
6164 |
+ |
(CAA)n |
Simple_repeat |
| scaffold19333 |
6298 |
6371 |
+ |
(ACCCTT)n |
Simple_repeat |
| scaffold19333 |
6388 |
6408 |
+ |
(AAC)n |
Simple_repeat |
| scaffold19333 |
6556 |
6604 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold19333 |
6801 |
6896 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
7008 |
7014 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold19333 |
7015 |
7095 |
+ |
(CTT)n |
Simple_repeat |
| scaffold19333 |
7096 |
7102 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold19333 |
7106 |
7134 |
+ |
(ACA)n |
Simple_repeat |
| scaffold19333 |
7135 |
7181 |
+ |
(AAT)n |
Simple_repeat |
| scaffold19333 |
7182 |
7253 |
+ |
(ACA)n |
Simple_repeat |
| scaffold19333 |
7398 |
7428 |
+ |
(CATCAC)n |
Simple_repeat |
| scaffold19333 |
7926 |
8155 |
- |
RS2766 |
Unspecified |
| scaffold19333 |
9047 |
9093 |
+ |
(TAT)n |
Simple_repeat |
| scaffold19333 |
10774 |
10826 |
+ |
(ACA)n |
Simple_repeat |
| scaffold19333 |
12430 |
12462 |
+ |
(GTA)n |
Simple_repeat |
| scaffold19333 |
13060 |
13259 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold19333 |
13928 |
14206 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold19333 |
14402 |
14446 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold19333 |
14843 |
15066 |
- |
RS469 |
Unspecified |
| scaffold19333 |
14869 |
15108 |
- |
RS3106 |
Unspecified |
| scaffold19333 |
15401 |
15749 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold19333 |
15788 |
18073 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold19333 |
18162 |
19022 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold19333 |
19019 |
20006 |
+ |
PL530 |
Unspecified |
| scaffold19333 |
20004 |
21473 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold19333 |
21677 |
21761 |
+ |
(TTTTTCA)n |
Simple_repeat |
| scaffold19333 |
21740 |
21778 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold19333 |
21780 |
22040 |
+ |
RS26 |
Unspecified |
| scaffold19333 |
22679 |
22717 |
+ |
(TT)n |
Simple_repeat |
| scaffold19333 |
22812 |
22906 |
+ |
(TGATTT)n |
Simple_repeat |
| scaffold19333 |
23121 |
23378 |
+ |
Copia-84_VV-LTR |
LTR/Copia |
| scaffold19333 |
23431 |
23715 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold19333 |
23724 |
23791 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold19333 |
23847 |
23891 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold19333 |
24241 |
24526 |
- |
RS469 |
Unspecified |
| scaffold19333 |
24293 |
24563 |
- |
RS3106 |
Unspecified |
| scaffold19333 |
24854 |
24889 |
+ |
Copia-84_VV-I |
LTR/Copia |
| scaffold19333 |
25040 |
25105 |
- |
RS469 |
Unspecified |
| scaffold19333 |
27291 |
27682 |
- |
RS29 |
Unspecified |
| scaffold19333 |
28419 |
28470 |
+ |
(AATCAT)n |
Simple_repeat |
| scaffold19333 |
28701 |
28745 |
+ |
(AAC)n |
Simple_repeat |
| scaffold19333 |
28986 |
29020 |
+ |
(CTAAAA)n |
Simple_repeat |
| scaffold19333 |
29041 |
30012 |
- |
RS155 |
Unspecified |
| scaffold19333 |
30013 |
30364 |
- |
PL575 |
Unspecified |
| scaffold19333 |
30370 |
31219 |
+ |
RS51 |
Unspecified |
| scaffold19333 |
30491 |
31443 |
- |
RS2700 |
Unspecified |
| scaffold19333 |
31444 |
31880 |
+ |
PL770 |
Unspecified |
| scaffold19333 |
31601 |
33102 |
+ |
RS801 |
Unspecified |
| scaffold19333 |
33622 |
33657 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
36123 |
36685 |
+ |
RS21 |
Unspecified |
| scaffold19333 |
36600 |
37825 |
+ |
RS21 |
Unspecified |
| scaffold19333 |
39324 |
39425 |
+ |
(AGCATC)n |
Simple_repeat |
| scaffold19333 |
39376 |
39461 |
+ |
(CAACAG)n |
Simple_repeat |
| scaffold19333 |
41113 |
41281 |
- |
PL538 |
Unspecified |
| scaffold19333 |
41281 |
41489 |
+ |
RS15876 |
Unspecified |
| scaffold19333 |
41862 |
42064 |
- |
RS1669 |
Unspecified |
| scaffold19333 |
43333 |
43753 |
+ |
PL886 |
Unspecified |
| scaffold19333 |
43753 |
43795 |
+ |
RS1496 |
Unspecified |
| scaffold19333 |
44891 |
44914 |
+ |
(A)n |
Simple_repeat |
| scaffold19333 |
47453 |
47509 |
+ |
Gypsy13-PTR_I-int |
LTR/Gypsy |
| scaffold19333 |
47999 |
49405 |
- |
RS228 |
Unspecified |
| scaffold19333 |
49416 |
49547 |
- |
RS228 |
Unspecified |
| scaffold19333 |
49721 |
50550 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold19333 |
50741 |
50835 |
- |
RS4475 |
Unspecified |
| scaffold19333 |
52663 |
52907 |
+ |
RS4 |
Unspecified |
| scaffold19333 |
53046 |
53124 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold19333 |
53202 |
53403 |
- |
PL902 |
Unspecified |
| scaffold19333 |
53740 |
53771 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold19333 |
53908 |
53967 |
+ |
(TTGTAT)n |
Simple_repeat |
| scaffold19333 |
57612 |
57740 |
- |
RS369 |
Unspecified |
| scaffold19333 |
58110 |
58162 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold19333 |
58601 |
58639 |
+ |
(AATA)n |
Simple_repeat |
| scaffold19333 |
59849 |
60074 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold19333 |
60242 |
60319 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
60455 |
60832 |
- |
PL255 |
Unspecified |
| scaffold19333 |
60886 |
60928 |
+ |
(TCT)n |
Simple_repeat |
| scaffold19333 |
60931 |
61031 |
+ |
(CAT)n |
Simple_repeat |
| scaffold19333 |
61466 |
61509 |
+ |
(GT)n |
Simple_repeat |
| scaffold19333 |
62067 |
62207 |
- |
RS2678 |
Unspecified |
| scaffold19333 |
63154 |
63220 |
+ |
(GTT)n |
Simple_repeat |
| scaffold19333 |
63573 |
63812 |
- |
RS279 |
Unspecified |
| scaffold19333 |
63851 |
63998 |
+ |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold19333 |
64181 |
64701 |
+ |
RS245 |
Unspecified |
| scaffold19333 |
64760 |
64797 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold19333 |
64818 |
65006 |
- |
RS10985 |
Unspecified |
| scaffold19333 |
65052 |
65101 |
+ |
(A)n |
Simple_repeat |
| scaffold19333 |
65316 |
65343 |
+ |
(T)n |
Simple_repeat |
| scaffold19333 |
65344 |
65375 |
+ |
(A)n |
Simple_repeat |
| scaffold19333 |
65521 |
66190 |
- |
RS369 |
Unspecified |
| scaffold19333 |
66588 |
66803 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
66772 |
66803 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
67009 |
67065 |
+ |
(TAA)n |
Simple_repeat |
| scaffold19333 |
68610 |
68627 |
+ |
(T)n |
Simple_repeat |
| scaffold19333 |
69144 |
69182 |
+ |
(ATA)n |
Simple_repeat |
| scaffold19333 |
69711 |
69798 |
+ |
(TA)n |
Simple_repeat |
| scaffold19333 |
70349 |
70401 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold19333 |
70750 |
71087 |
+ |
RS221 |
Unspecified |
| scaffold19333 |
71272 |
71354 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold19333 |
71696 |
71742 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
72170 |
72196 |
+ |
(T)n |
Simple_repeat |
| scaffold19333 |
76879 |
77025 |
+ |
(ATCCAA)n |
Simple_repeat |
| scaffold19333 |
78796 |
78866 |
+ |
(TCA)n |
Simple_repeat |
| scaffold19333 |
78871 |
78979 |
+ |
(ATA)n |
Simple_repeat |
| scaffold19333 |
81886 |
81963 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold19333 |
87026 |
87199 |
+ |
RS233 |
Unspecified |
| scaffold19333 |
87254 |
87281 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
88899 |
89129 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold19333 |
89146 |
89774 |
+ |
RS1141 |
Unspecified |
| scaffold19333 |
89651 |
89789 |
- |
RS2735 |
Unspecified |
| scaffold19333 |
89984 |
90005 |
+ |
(T)n |
Simple_repeat |
| scaffold19333 |
90227 |
90290 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold19333 |
90329 |
90560 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold19333 |
92064 |
92121 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold19333 |
92464 |
92613 |
+ |
RS178 |
Unspecified |
| scaffold19333 |
92875 |
92897 |
+ |
(A)n |
Simple_repeat |
| scaffold19333 |
93242 |
93265 |
+ |
(A)n |
Simple_repeat |
| scaffold19333 |
93273 |
93350 |
+ |
(T)n |
Simple_repeat |
| scaffold19333 |
93583 |
94864 |
+ |
RS260 |
Unspecified |
| scaffold19333 |
95201 |
95821 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold19333 |
95603 |
95727 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold19333 |
96798 |
96833 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold19333 |
97792 |
97831 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold19333 |
98184 |
99040 |
+ |
PL196 |
Unspecified |
| scaffold19333 |
98418 |
100354 |
- |
RS420 |
Unspecified |
| scaffold19333 |
99571 |
100609 |
- |
PL891 |
Unspecified |
| scaffold19333 |
100978 |
101015 |
+ |
(TTATGC)n |
Simple_repeat |
| scaffold19333 |
102905 |
105346 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold19333 |
105250 |
106790 |
- |
PL816 |
Unspecified |
| scaffold19333 |
106169 |
107391 |
+ |
RS645 |
Unspecified |
| scaffold19333 |
107946 |
108036 |
+ |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold19333 |
108312 |
108605 |
- |
RS1207 |
Unspecified |
| scaffold19333 |
109386 |
110045 |
+ |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold19333 |
110223 |
110259 |
+ |
(GAT)n |
Simple_repeat |
| scaffold19333 |
110491 |
110549 |
+ |
(TTTTCAT)n |
Simple_repeat |
| scaffold19333 |
111310 |
111369 |
+ |
(ACCAACA)n |
Simple_repeat |
| scaffold19333 |
112473 |
112499 |
+ |
GA-rich |
Low_complexity |
| scaffold19333 |
112972 |
113024 |
- |
RS572 |
Unspecified |
| scaffold19333 |
113070 |
113856 |
- |
Gypsy-22_GM-I |
LTR/Gypsy |
| scaffold19333 |
115572 |
115608 |
+ |
(TTGTTGA)n |
Simple_repeat |
| scaffold19333 |
116118 |
116167 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold19333 |
116332 |
116973 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold19333 |
116453 |
116938 |
- |
Gypsy-22_GM-I |
LTR/Gypsy |
| scaffold19333 |
116970 |
119018 |
- |
RS1686 |
Unspecified |
| scaffold19333 |
119040 |
119102 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold19333 |
119642 |
119680 |
+ |
(TGAAAAA)n |
Simple_repeat |
| scaffold19333 |
120553 |
120630 |
+ |
A-rich |
Low_complexity |
| scaffold19333 |
120841 |
120878 |
+ |
(CAT)n |
Simple_repeat |
| scaffold19333 |
121056 |
121666 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold19333 |
121783 |
122308 |
+ |
RS1930 |
Unspecified |
| scaffold19333 |
121873 |
122430 |
+ |
RS661 |
Unspecified |
| scaffold19333 |
122736 |
122913 |
+ |
RS1207 |
Unspecified |
| scaffold19333 |
125277 |
126055 |
- |
ATGP1-I |
LTR/Gypsy |
| scaffold19333 |
128416 |
128456 |
+ |
(ACCAACA)n |
Simple_repeat |
| scaffold19333 |
129212 |
129238 |
+ |
GA-rich |
Low_complexity |
| scaffold19333 |
129711 |
130167 |
- |
RS101 |
Unspecified |
| scaffold19333 |
131044 |
131090 |
+ |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold19333 |
132019 |
132059 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold19333 |
132500 |
132771 |
- |
RS368 |
Unspecified |
| scaffold19333 |
132772 |
133356 |
- |
PL398 |
Unspecified |
| scaffold19333 |
133520 |
133547 |
+ |
(T)n |
Simple_repeat |
| scaffold19333 |
136059 |
136086 |
+ |
(G)n |
Simple_repeat |