scaffold194 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold194 |
1 |
406 |
+ |
RS1275 |
Unspecified |
| scaffold194 |
729 |
753 |
+ |
(TGAA)n |
Simple_repeat |
| scaffold194 |
1511 |
1554 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold194 |
1646 |
1705 |
+ |
(GGACC)n |
Simple_repeat |
| scaffold194 |
1706 |
1730 |
+ |
(GGTCC)n |
Simple_repeat |
| scaffold194 |
1747 |
1961 |
+ |
(TCCGG)n |
Simple_repeat |
| scaffold194 |
2206 |
2286 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold194 |
2731 |
3116 |
- |
PL438 |
Unspecified |
| scaffold194 |
3616 |
3776 |
- |
RS2208 |
Unspecified |
| scaffold194 |
4056 |
4076 |
+ |
(A)n |
Simple_repeat |
| scaffold194 |
4647 |
4813 |
+ |
PL541 |
Unspecified |
| scaffold194 |
6919 |
6935 |
+ |
(T)n |
Simple_repeat |
| scaffold194 |
6986 |
7026 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold194 |
7536 |
7730 |
- |
RS9533 |
Unspecified |
| scaffold194 |
8032 |
8071 |
+ |
(GTG)n |
Simple_repeat |
| scaffold194 |
8128 |
8144 |
+ |
(TC)n |
Simple_repeat |
| scaffold194 |
8144 |
8169 |
+ |
(T)n |
Simple_repeat |
| scaffold194 |
8252 |
8279 |
+ |
(T)n |
Simple_repeat |
| scaffold194 |
8460 |
8504 |
+ |
RS402 |
Unspecified |
| scaffold194 |
10601 |
10639 |
+ |
(AAAACT)n |
Simple_repeat |
| scaffold194 |
10793 |
11054 |
+ |
RS3438 |
Unspecified |
| scaffold194 |
12335 |
12374 |
+ |
(ACCAAG)n |
Simple_repeat |
| scaffold194 |
12469 |
12505 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold194 |
12582 |
12648 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold194 |
12673 |
13402 |
- |
RS480 |
Unspecified |
| scaffold194 |
13403 |
13518 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold194 |
13721 |
14003 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold194 |
14302 |
15928 |
- |
RS265 |
Unspecified |
| scaffold194 |
15946 |
17133 |
+ |
RLG_scAle_5_1-I |
LTR/Copia |
| scaffold194 |
17651 |
18066 |
+ |
RS1700 |
Unspecified |
| scaffold194 |
17705 |
18079 |
+ |
RS137 |
Unspecified |
| scaffold194 |
18308 |
18353 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold194 |
18489 |
18980 |
- |
RS1005 |
Unspecified |
| scaffold194 |
19201 |
19688 |
+ |
(TTA)n |
Simple_repeat |
| scaffold194 |
19201 |
19242 |
+ |
(TTA)n |
Simple_repeat |
| scaffold194 |
19230 |
19688 |
+ |
PL870 |
Unspecified |
| scaffold194 |
19859 |
20020 |
+ |
RLG_scAle_5_1-I |
LTR/Copia |
| scaffold194 |
20028 |
20160 |
- |
RS8311 |
Unspecified |
| scaffold194 |
20168 |
21266 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold194 |
23115 |
23142 |
+ |
(ATAAA)n |
Simple_repeat |
| scaffold194 |
25017 |
26463 |
+ |
Copia-60_SB-I |
LTR/Copia |
| scaffold194 |
26495 |
26523 |
+ |
(AT)n |
Simple_repeat |
| scaffold194 |
26795 |
26826 |
+ |
(TA)n |
Simple_repeat |
| scaffold194 |
27207 |
27258 |
+ |
(TTTATAA)n |
Simple_repeat |
| scaffold194 |
28216 |
28256 |
+ |
(TTCTATT)n |
Simple_repeat |
| scaffold194 |
28447 |
28488 |
+ |
(TTCTCTC)n |
Simple_repeat |
| scaffold194 |
28490 |
28541 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold194 |
35537 |
36070 |
+ |
RS169 |
Unspecified |
| scaffold194 |
36200 |
36983 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold194 |
38975 |
39224 |
+ |
Copia26-VV_I-int |
LTR/Copia |
| scaffold194 |
39431 |
39724 |
+ |
Copia26-VV_I-int |
LTR/Copia |
| scaffold194 |
39754 |
40152 |
+ |
Copia-88_VV-I |
LTR/Copia |
| scaffold194 |
40421 |
40751 |
- |
RS1404 |
Unspecified |
| scaffold194 |
40767 |
40802 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold194 |
41485 |
41585 |
+ |
(TTT)n |
Simple_repeat |
| scaffold194 |
42614 |
42645 |
+ |
A-rich |
Low_complexity |
| scaffold194 |
42705 |
43159 |
- |
RS3440 |
Unspecified |
| scaffold194 |
43718 |
43860 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold194 |
43874 |
43940 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold194 |
43962 |
44299 |
- |
RS2268 |
Unspecified |
| scaffold194 |
44312 |
44678 |
- |
RS1310 |
Unspecified |
| scaffold194 |
45496 |
45542 |
+ |
(AATAATC)n |
Simple_repeat |
| scaffold194 |
46033 |
46869 |
+ |
RS61 |
Unspecified |
| scaffold194 |
46923 |
46974 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold194 |
48098 |
48131 |
+ |
(TCTACC)n |
Simple_repeat |
| scaffold194 |
48186 |
48228 |
+ |
(ATC)n |
Simple_repeat |
| scaffold194 |
48387 |
48405 |
+ |
(T)n |
Simple_repeat |
| scaffold194 |
48517 |
48585 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold194 |
48539 |
48592 |
- |
Alfare1_I-int |
LTR/Copia? |
| scaffold194 |
49076 |
49115 |
- |
RS931 |
Unspecified |
| scaffold194 |
49771 |
49820 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold194 |
49821 |
49835 |
+ |
(AATCAAT)n |
Simple_repeat |
| scaffold194 |
50970 |
51003 |
+ |
(TCTACC)n |
Simple_repeat |
| scaffold194 |
51058 |
51117 |
+ |
(ATC)n |
Simple_repeat |
| scaffold194 |
52678 |
52715 |
+ |
(TTTAGAT)n |
Simple_repeat |
| scaffold194 |
55121 |
55161 |
+ |
(TATCG)n |
Simple_repeat |
| scaffold194 |
55168 |
55189 |
+ |
(TGAT)n |
Simple_repeat |
| scaffold194 |
55189 |
55747 |
+ |
RS8675 |
Unspecified |
| scaffold194 |
55824 |
56061 |
- |
RS2689 |
Unspecified |
| scaffold194 |
56137 |
56400 |
- |
EnSpm-17_SBi |
DNA/CMC-EnSpm |
| scaffold194 |
56780 |
57317 |
+ |
PL408 |
Unspecified |
| scaffold194 |
58948 |
59031 |
+ |
(TATTTCAA)n |
Simple_repeat |
| scaffold194 |
59235 |
59412 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold194 |
59817 |
60392 |
- |
PL936 |
Unspecified |
| scaffold194 |
60480 |
60878 |
+ |
PL785 |
Unspecified |
| scaffold194 |
60805 |
61394 |
- |
RS69 |
Unspecified |
| scaffold194 |
61281 |
61566 |
- |
RS266 |
Unspecified |
| scaffold194 |
61583 |
61626 |
+ |
(TGTATTA)n |
Simple_repeat |
| scaffold194 |
61753 |
62684 |
- |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold194 |
62618 |
62684 |
- |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold194 |
63760 |
64177 |
- |
EnSpm-11_STu |
DNA/CMC-EnSpm |
| scaffold194 |
65181 |
65277 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold194 |
65685 |
65755 |
+ |
LINE1G_MT |
LINE/L1 |
| scaffold194 |
65961 |
66736 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold194 |
66876 |
66999 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold194 |
67650 |
68126 |
- |
RS3987 |
Unspecified |
| scaffold194 |
69648 |
71854 |
- |
RS254 |
Unspecified |
| scaffold194 |
71877 |
72591 |
+ |
RS540 |
Unspecified |
| scaffold194 |
72403 |
72620 |
+ |
RS1563 |
Unspecified |
| scaffold194 |
73160 |
73193 |
+ |
(CTATTG)n |
Simple_repeat |
| scaffold194 |
74699 |
74874 |
- |
RS878 |
Unspecified |
| scaffold194 |
74725 |
75020 |
+ |
RS1563 |
Unspecified |
| scaffold194 |
74833 |
75092 |
+ |
RS1563 |
Unspecified |
| scaffold194 |
75043 |
75278 |
- |
RS44 |
Unspecified |
| scaffold194 |
75071 |
76195 |
- |
RS44 |
Unspecified |
| scaffold194 |
75592 |
76446 |
- |
RS21 |
Unspecified |
| scaffold194 |
76447 |
76809 |
- |
RS246 |
Unspecified |
| scaffold194 |
77538 |
77995 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold194 |
78524 |
78551 |
+ |
(CTTTG)n |
Simple_repeat |
| scaffold194 |
78898 |
78947 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold194 |
83443 |
83678 |
- |
PL411 |
Unspecified |
| scaffold194 |
88322 |
88361 |
+ |
(TTCAAT)n |
Simple_repeat |
| scaffold194 |
88961 |
89027 |
+ |
(CTT)n |
Simple_repeat |
| scaffold194 |
89068 |
89218 |
+ |
RS3764 |
Unspecified |
| scaffold194 |
89500 |
89571 |
+ |
(ATTGTAA)n |
Simple_repeat |
| scaffold194 |
89885 |
90462 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold194 |
90436 |
90462 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold194 |
90468 |
90516 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold194 |
90959 |
91018 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold194 |
91078 |
91254 |
+ |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold194 |
91576 |
92204 |
- |
RS661 |
Unspecified |
| scaffold194 |
91768 |
92287 |
- |
RS1930 |
Unspecified |
| scaffold194 |
92382 |
93109 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold194 |
93241 |
93279 |
+ |
(GAT)n |
Simple_repeat |
| scaffold194 |
93466 |
93509 |
+ |
Gypsy-27_VV-I |
LTR/Gypsy |
| scaffold194 |
93514 |
93550 |
+ |
(TTTTCGT)n |
Simple_repeat |
| scaffold194 |
95146 |
95194 |
+ |
(GAAGTTTCGT)n |
Simple_repeat |
| scaffold194 |
284117 |
284282 |
- |
RS49 |
Unspecified |