scaffold20578 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold20578 |
546 |
579 |
- |
Copia7-ZM_LTR |
LTR/Copia |
scaffold20578 |
1148 |
1225 |
+ |
(AAC)n |
Simple_repeat |
scaffold20578 |
1461 |
1496 |
+ |
(TTTGAC)n |
Simple_repeat |
scaffold20578 |
2500 |
3199 |
+ |
PL898 |
Unspecified |
scaffold20578 |
3322 |
3649 |
+ |
RS23 |
Unspecified |
scaffold20578 |
3405 |
3693 |
+ |
RS23 |
Unspecified |
scaffold20578 |
3529 |
3693 |
+ |
RS11555 |
Unspecified |
scaffold20578 |
4250 |
4483 |
+ |
PL706 |
Unspecified |
scaffold20578 |
4486 |
4964 |
+ |
PL706 |
Unspecified |
scaffold20578 |
5012 |
5562 |
- |
RS14234 |
Unspecified |
scaffold20578 |
8040 |
8172 |
+ |
COPI1_LTR |
LTR/Copia |
scaffold20578 |
8311 |
8386 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold20578 |
8439 |
8601 |
+ |
RS628 |
Unspecified |
scaffold20578 |
8442 |
8666 |
+ |
RS1448 |
Unspecified |
scaffold20578 |
8582 |
8801 |
+ |
RS280 |
Unspecified |
scaffold20578 |
9064 |
9368 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
9283 |
9368 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
9865 |
10310 |
- |
RS3870 |
Unspecified |
scaffold20578 |
9928 |
10372 |
- |
RS3487 |
Unspecified |
scaffold20578 |
10172 |
10520 |
- |
RS5479 |
Unspecified |
scaffold20578 |
10476 |
10815 |
- |
RS12133 |
Unspecified |
scaffold20578 |
10879 |
11167 |
- |
Copia7-ZM_I-int |
LTR/Copia |
scaffold20578 |
11350 |
11530 |
- |
Copia7-ZM_I-int |
LTR/Copia |
scaffold20578 |
11805 |
11840 |
+ |
(CAAGTA)n |
Simple_repeat |
scaffold20578 |
12076 |
12117 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
13232 |
13265 |
+ |
(CAGGA)n |
Simple_repeat |
scaffold20578 |
13471 |
13491 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
13581 |
13698 |
+ |
SHACOP15_LTR_MT |
LTR/Copia |
scaffold20578 |
15722 |
15818 |
+ |
Gypsy-14_SB-I |
LTR/Gypsy |
scaffold20578 |
16116 |
17420 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
scaffold20578 |
17482 |
17732 |
- |
RS599 |
Unspecified |
scaffold20578 |
19205 |
19331 |
- |
ATGP7I |
LTR/Gypsy |
scaffold20578 |
19516 |
19915 |
- |
Gypsy-33_VV-I |
LTR/Gypsy |
scaffold20578 |
20152 |
20449 |
+ |
RS644 |
Unspecified |
scaffold20578 |
20200 |
20452 |
- |
RS599 |
Unspecified |
scaffold20578 |
20964 |
21117 |
- |
PL266 |
Unspecified |
scaffold20578 |
21118 |
21249 |
+ |
Gypsy-20_BRa-I |
LTR/Gypsy |
scaffold20578 |
21217 |
21257 |
+ |
Gypsy-4_Pru-I |
LTR/Gypsy |
scaffold20578 |
21564 |
22803 |
+ |
Gypsy-20_BRa-I |
LTR/Gypsy |
scaffold20578 |
26404 |
26521 |
+ |
SHACOP15_LTR_MT |
LTR/Copia |
scaffold20578 |
26670 |
27097 |
+ |
RS123 |
Unspecified |
scaffold20578 |
27913 |
28358 |
- |
RS3870 |
Unspecified |
scaffold20578 |
27976 |
28417 |
- |
RS3487 |
Unspecified |
scaffold20578 |
28550 |
28717 |
- |
PL469 |
Unspecified |
scaffold20578 |
29174 |
29184 |
+ |
(TTAGTT)n |
Simple_repeat |
scaffold20578 |
29185 |
29221 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
29222 |
29232 |
+ |
(TTAGTT)n |
Simple_repeat |
scaffold20578 |
29392 |
29470 |
+ |
RS4917 |
Unspecified |
scaffold20578 |
29394 |
29486 |
- |
RS6686 |
Unspecified |
scaffold20578 |
29471 |
29672 |
- |
RS6686 |
Unspecified |
scaffold20578 |
29668 |
29906 |
+ |
RS14098 |
Unspecified |
scaffold20578 |
30868 |
31015 |
+ |
RS10344 |
Unspecified |
scaffold20578 |
31192 |
31503 |
- |
RS4664 |
Unspecified |
scaffold20578 |
31620 |
31697 |
+ |
(GTT)n |
Simple_repeat |
scaffold20578 |
31705 |
31827 |
+ |
(GCT)n |
Simple_repeat |
scaffold20578 |
32402 |
32431 |
+ |
(TTGAA)n |
Simple_repeat |
scaffold20578 |
34222 |
34839 |
+ |
RS9007 |
Unspecified |
scaffold20578 |
34889 |
34956 |
+ |
RS1468 |
Unspecified |
scaffold20578 |
35022 |
35051 |
+ |
(TTGAA)n |
Simple_repeat |
scaffold20578 |
35861 |
35916 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
36497 |
36587 |
+ |
(TTAATA)n |
Simple_repeat |
scaffold20578 |
37013 |
37030 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
37474 |
37655 |
+ |
RS6294 |
Unspecified |
scaffold20578 |
37835 |
37877 |
+ |
(AATATAA)n |
Simple_repeat |
scaffold20578 |
37954 |
38057 |
+ |
RS3203 |
Unspecified |
scaffold20578 |
38238 |
38500 |
- |
RS512 |
Unspecified |
scaffold20578 |
38499 |
38557 |
- |
RS512 |
Unspecified |
scaffold20578 |
38736 |
39052 |
+ |
RS1213 |
Unspecified |
scaffold20578 |
39116 |
39147 |
+ |
(ATCAAT)n |
Simple_repeat |
scaffold20578 |
39148 |
39203 |
+ |
(ATATCAAT)n |
Simple_repeat |
scaffold20578 |
39502 |
39539 |
+ |
(TATTT)n |
Simple_repeat |
scaffold20578 |
41712 |
41757 |
+ |
(CTG)n |
Simple_repeat |
scaffold20578 |
41774 |
41804 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
42623 |
42672 |
+ |
(AAGCAC)n |
Simple_repeat |
scaffold20578 |
42741 |
42764 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
43809 |
43840 |
+ |
(CTGTATT)n |
Simple_repeat |
scaffold20578 |
44909 |
45123 |
+ |
(CTG)n |
Simple_repeat |
scaffold20578 |
46000 |
46459 |
+ |
RS35 |
Unspecified |
scaffold20578 |
46883 |
47041 |
- |
RS15592 |
Unspecified |
scaffold20578 |
50026 |
50083 |
+ |
(ACAGAA)n |
Simple_repeat |
scaffold20578 |
50710 |
50782 |
+ |
(TTAAT)n |
Simple_repeat |
scaffold20578 |
50751 |
50790 |
+ |
(TAA)n |
Simple_repeat |
scaffold20578 |
51386 |
51440 |
+ |
PL675 |
Unspecified |
scaffold20578 |
51440 |
51733 |
- |
PL470 |
Unspecified |
scaffold20578 |
51979 |
52243 |
- |
RS533 |
Unspecified |
scaffold20578 |
52368 |
52391 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
52446 |
52933 |
- |
PL470 |
Unspecified |
scaffold20578 |
52947 |
53320 |
- |
RS8 |
Unspecified |
scaffold20578 |
53460 |
53569 |
+ |
RS9614 |
Unspecified |
scaffold20578 |
53908 |
54007 |
- |
PL139 |
Unspecified |
scaffold20578 |
53910 |
54020 |
- |
PL562 |
Unspecified |
scaffold20578 |
53997 |
54483 |
+ |
RS534 |
Unspecified |
scaffold20578 |
54669 |
54774 |
+ |
RS1394 |
Unspecified |
scaffold20578 |
55317 |
55353 |
+ |
(TTTTGA)n |
Simple_repeat |
scaffold20578 |
55891 |
56068 |
+ |
RS10237 |
Unspecified |
scaffold20578 |
56539 |
56582 |
+ |
(CAA)n |
Simple_repeat |
scaffold20578 |
57525 |
57694 |
+ |
RS1035 |
Unspecified |
scaffold20578 |
57962 |
58082 |
- |
RS3558 |
Unspecified |
scaffold20578 |
59317 |
59399 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
60211 |
60249 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
60835 |
60840 |
+ |
(AATAAGA)n |
Simple_repeat |
scaffold20578 |
60841 |
60890 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
63148 |
63219 |
+ |
(ATTGA)n |
Simple_repeat |
scaffold20578 |
63380 |
63510 |
- |
RS3521 |
Unspecified |
scaffold20578 |
63522 |
63808 |
+ |
(ACC)n |
Simple_repeat |
scaffold20578 |
63834 |
63935 |
+ |
(TTA)n |
Simple_repeat |
scaffold20578 |
67848 |
68572 |
- |
MuDR-4_Mad |
DNA/MULE-MuDR |
scaffold20578 |
68795 |
68892 |
+ |
PL780 |
Unspecified |
scaffold20578 |
68798 |
68884 |
- |
RS1415 |
Unspecified |
scaffold20578 |
69497 |
69528 |
+ |
(AAT)n |
Simple_repeat |
scaffold20578 |
69804 |
69830 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
69956 |
70006 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
70769 |
70880 |
- |
RS776 |
Unspecified |
scaffold20578 |
70996 |
71045 |
+ |
(TAATA)n |
Simple_repeat |
scaffold20578 |
71130 |
71159 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
71263 |
71352 |
+ |
RS9823 |
Unspecified |
scaffold20578 |
73102 |
73147 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
73247 |
73378 |
+ |
RS170 |
Unspecified |
scaffold20578 |
73691 |
73792 |
+ |
RS9823 |
Unspecified |
scaffold20578 |
73817 |
73899 |
- |
RS3354 |
Unspecified |
scaffold20578 |
73841 |
73967 |
+ |
RS7529 |
Unspecified |
scaffold20578 |
74030 |
74343 |
+ |
RS12189 |
Unspecified |
scaffold20578 |
74497 |
74772 |
+ |
RS8598 |
Unspecified |
scaffold20578 |
75000 |
75100 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
75249 |
75802 |
- |
RS12449 |
Unspecified |
scaffold20578 |
76062 |
76095 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
76133 |
76279 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold20578 |
76355 |
76384 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
76492 |
76564 |
- |
PL380 |
Unspecified |
scaffold20578 |
77016 |
77336 |
- |
PL438 |
Unspecified |
scaffold20578 |
77437 |
77463 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
77689 |
77720 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
79508 |
79562 |
+ |
(TTTAT)n |
Simple_repeat |
scaffold20578 |
79589 |
79659 |
+ |
(CCG)n |
Simple_repeat |
scaffold20578 |
79932 |
80460 |
- |
RS12449 |
Unspecified |
scaffold20578 |
80820 |
80987 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold20578 |
81069 |
81099 |
+ |
(AT)n |
Simple_repeat |
scaffold20578 |
83378 |
83407 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
83833 |
83887 |
+ |
GA-rich |
Low_complexity |
scaffold20578 |
84210 |
84327 |
+ |
RS6533 |
Unspecified |
scaffold20578 |
84785 |
84879 |
- |
RS2678 |
Unspecified |
scaffold20578 |
84942 |
85020 |
- |
RS4039 |
Unspecified |
scaffold20578 |
85020 |
85081 |
+ |
RS1723 |
Unspecified |
scaffold20578 |
85080 |
85303 |
- |
RS7079 |
Unspecified |
scaffold20578 |
85556 |
85625 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
85655 |
85753 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
85818 |
85917 |
- |
RS3537 |
Unspecified |
scaffold20578 |
86022 |
86253 |
- |
RS6019 |
Unspecified |
scaffold20578 |
86053 |
86457 |
- |
RS2042 |
Unspecified |
scaffold20578 |
86454 |
86496 |
- |
RS2042 |
Unspecified |
scaffold20578 |
86500 |
86636 |
- |
RS7889 |
Unspecified |
scaffold20578 |
86739 |
86834 |
- |
RS5646 |
Unspecified |
scaffold20578 |
86981 |
86991 |
+ |
(TTAT)n |
Simple_repeat |
scaffold20578 |
86992 |
87032 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
87033 |
87041 |
+ |
(TTAT)n |
Simple_repeat |
scaffold20578 |
87130 |
87251 |
- |
RS3371 |
Unspecified |
scaffold20578 |
87212 |
87427 |
- |
RS3371 |
Unspecified |
scaffold20578 |
87440 |
87473 |
+ |
(TATATCTA)n |
Simple_repeat |
scaffold20578 |
87962 |
87992 |
+ |
(TTGAT)n |
Simple_repeat |
scaffold20578 |
88207 |
88273 |
- |
RS4664 |
Unspecified |
scaffold20578 |
89875 |
90014 |
+ |
RS12336 |
Unspecified |
scaffold20578 |
91024 |
91108 |
- |
RS7504 |
Unspecified |
scaffold20578 |
91991 |
92142 |
- |
L1-4_VC |
LINE/L1 |
scaffold20578 |
92612 |
92686 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold20578 |
92711 |
92794 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold20578 |
93098 |
93746 |
- |
PL918 |
Unspecified |
scaffold20578 |
93512 |
93849 |
+ |
RS14 |
Unspecified |
scaffold20578 |
93743 |
94253 |
- |
RS403 |
Unspecified |
scaffold20578 |
93852 |
94460 |
+ |
RS14 |
Unspecified |
scaffold20578 |
94107 |
94565 |
- |
PL251 |
Unspecified |
scaffold20578 |
94524 |
94917 |
- |
RS403 |
Unspecified |
scaffold20578 |
94585 |
94977 |
- |
PL874 |
Unspecified |
scaffold20578 |
95267 |
95444 |
- |
Ogre-PT2_LTR |
LTR/Gypsy |
scaffold20578 |
95509 |
95797 |
- |
PL874 |
Unspecified |
scaffold20578 |
96237 |
96299 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
96448 |
96591 |
+ |
RS11928 |
Unspecified |
scaffold20578 |
97014 |
97147 |
- |
RS3459 |
Unspecified |
scaffold20578 |
97291 |
97320 |
+ |
(GGTGAC)n |
Simple_repeat |
scaffold20578 |
97479 |
97607 |
+ |
(TGT)n |
Simple_repeat |
scaffold20578 |
97767 |
98277 |
+ |
PL799 |
Unspecified |
scaffold20578 |
98517 |
98557 |
+ |
(TA)n |
Simple_repeat |
scaffold20578 |
99749 |
99829 |
- |
RS1733 |
Unspecified |
scaffold20578 |
99829 |
99950 |
- |
RS43 |
Unspecified |
scaffold20578 |
100307 |
100431 |
- |
RS13160 |
Unspecified |
scaffold20578 |
100326 |
100446 |
- |
RS4387 |
Unspecified |
scaffold20578 |
100442 |
100503 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
100497 |
100591 |
- |
RS4387 |
Unspecified |
scaffold20578 |
100599 |
101240 |
- |
RS2491 |
Unspecified |
scaffold20578 |
101540 |
101921 |
- |
RS4035 |
Unspecified |
scaffold20578 |
102280 |
102372 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
102443 |
102636 |
- |
RS6712 |
Unspecified |
scaffold20578 |
102888 |
102924 |
+ |
(ATTT)n |
Simple_repeat |
scaffold20578 |
103163 |
103274 |
+ |
PL624 |
Unspecified |
scaffold20578 |
103393 |
103462 |
+ |
(TAATA)n |
Simple_repeat |
scaffold20578 |
103518 |
103555 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
103660 |
103749 |
+ |
RS9823 |
Unspecified |
scaffold20578 |
103786 |
103925 |
- |
RS6712 |
Unspecified |
scaffold20578 |
104734 |
104786 |
+ |
A-rich |
Low_complexity |
scaffold20578 |
104884 |
105016 |
+ |
RS170 |
Unspecified |
scaffold20578 |
105020 |
105111 |
- |
PL380 |
Unspecified |
scaffold20578 |
105159 |
105214 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
106196 |
106241 |
- |
LINE1-23_SBi |
LINE/L1 |
scaffold20578 |
106997 |
107968 |
- |
LINE1I_MT |
LINE/L1 |
scaffold20578 |
110599 |
110638 |
+ |
GA-rich |
Low_complexity |
scaffold20578 |
110647 |
110825 |
- |
RS11565 |
Unspecified |
scaffold20578 |
110699 |
110843 |
- |
RS7746 |
Unspecified |
scaffold20578 |
110853 |
111136 |
+ |
RS15470 |
Unspecified |
scaffold20578 |
110880 |
111124 |
+ |
RS4 |
Unspecified |
scaffold20578 |
111176 |
111275 |
+ |
(TAT)n |
Simple_repeat |
scaffold20578 |
111396 |
111514 |
- |
RS6180 |
Unspecified |
scaffold20578 |
111515 |
111650 |
+ |
RS6867 |
Unspecified |
scaffold20578 |
112623 |
112724 |
+ |
RS9823 |
Unspecified |
scaffold20578 |
112750 |
112831 |
- |
RS3354 |
Unspecified |
scaffold20578 |
112773 |
112900 |
+ |
RS7529 |
Unspecified |
scaffold20578 |
112901 |
112935 |
+ |
(AAAAT)n |
Simple_repeat |
scaffold20578 |
112942 |
113287 |
+ |
RS12189 |
Unspecified |
scaffold20578 |
113500 |
113778 |
+ |
RS8598 |
Unspecified |
scaffold20578 |
114255 |
114808 |
- |
RS12449 |
Unspecified |
scaffold20578 |
115083 |
115107 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
115145 |
115289 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold20578 |
116013 |
116332 |
- |
PL438 |
Unspecified |
scaffold20578 |
116529 |
116589 |
+ |
(AATTT)n |
Simple_repeat |
scaffold20578 |
116861 |
117084 |
- |
PL688 |
Unspecified |
scaffold20578 |
117173 |
117191 |
+ |
(A)n |
Simple_repeat |
scaffold20578 |
117300 |
117557 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold20578 |
117728 |
117804 |
+ |
(T)n |
Simple_repeat |
scaffold20578 |
117855 |
117945 |
- |
RS13461 |
Unspecified |
scaffold20578 |
117933 |
118056 |
+ |
RS10602 |
Unspecified |
scaffold20578 |
118101 |
118163 |
- |
RS4039 |
Unspecified |
scaffold20578 |
118187 |
118434 |
- |
RS2042 |
Unspecified |
scaffold20578 |
118431 |
118713 |
- |
RS3309 |
Unspecified |